Uoli018361.1
Basic Information
- Insect
- Udea olivalis
- Gene Symbol
- -
- Assembly
- GCA_947369235.1
- Location
- OX376351.1:4128928-4145437[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.25 25 6.4 0.5 1 23 89 112 89 112 0.94 2 20 1.4 1.4e+02 4.0 0.1 3 23 117 137 116 137 0.96 3 20 0.44 44 5.6 0.0 2 23 141 163 140 163 0.91 4 20 0.97 96 4.5 0.2 3 23 391 412 389 412 0.95 5 20 1.7 1.7e+02 3.7 0.1 1 20 420 439 420 441 0.91 6 20 0.0015 0.15 13.4 0.7 2 23 451 472 450 472 0.95 7 20 2.6 2.6e+02 3.2 1.7 1 23 488 511 488 512 0.85 8 20 0.093 9.2 7.7 1.6 1 23 520 543 520 543 0.93 9 20 7.8 7.8e+02 1.7 1.0 1 23 554 577 554 577 0.90 10 20 8.2 8.1e+02 1.6 0.5 10 23 595 609 592 609 0.88 11 20 0.033 3.3 9.1 0.4 2 23 622 644 621 644 0.87 12 20 3.5e-05 0.0034 18.5 1.8 1 23 678 700 678 700 0.97 13 20 3.1e-05 0.0031 18.7 0.9 2 23 708 729 708 729 0.97 14 20 8.1e-05 0.0081 17.3 2.3 1 23 734 756 734 756 0.96 15 20 0.0011 0.11 13.8 0.7 1 23 762 784 762 784 0.98 16 20 2.9e-05 0.0029 18.7 1.1 1 23 790 812 790 812 0.94 17 20 0.0004 0.04 15.1 2.4 2 23 819 840 819 840 0.98 18 20 0.0021 0.2 12.9 0.4 2 23 849 871 848 871 0.97 19 20 0.00082 0.081 14.2 0.2 1 23 876 898 876 898 0.97 20 20 1.6e-05 0.0016 19.6 1.9 1 23 904 927 904 927 0.98
Sequence Information
- Coding Sequence
- ATGTCTTCAGAAGATTCAGACGATGAACCTCTATCAGTTTTAGCGGCTGCTAAAAAGCTGAATCCCGAAAATTTCGAGATATTTGATAGTTCAGATATCGAGGTGGTTCCGATCCGGAAAAGAAAGAAAAAGAAGAATTACTTAGAACCTGATAATCTTGCTATTACAATTAAGTTATGTAAAACTAGAACTGATACTGTTAGAGTGGTAGAAAGGCCTACGGATGTATGGCTGTACATGAAAGACTTAAATCCAACTGGCCCCTATAGTTGCTTGTTGTGCCAATATTGGTTTATAAACCGGTCTAAACTTATTCTCCACTATATACTGAACCACAGAAAGAACTTTTGTGGAATCTGCAGATATTTTGTACCAGAAAAAGAAGATTGGATCAACCACATAAAATTCCACACACCTTGGCCCTGCTCACAATGTTCCTTGACATACCCCACAGAGCCCGAAATGAGAGAACACCTGAGTGCTGTTCACAACCTAGTCCACTGCTGTCTTTGCCACTTCCGAACAACAGATGATGATCAGTACAACAAACACCTAAAACAGAAACATAATGTTACAACTGTTGTTAATAAAAATGATGATCTGTGGGAAATTGATTCAGTAGGCAATTTTGTTTGCACTCTTTGCACAAAAGCAAACAATCCACCCACTACATTTTTCGGTCATTACATGGGCTACCATCATTTTACACTTAAGTGTCTAACCAACATTATAGCTGGCACAGAACCACCATTCTCTGTAGAAGGAGCTAATGTGAGCTCCGACTTCATTGAAGGCCAGTTAAAGATCCAAGATAAAATTGGCTATGTAGATATTGATAAAAAACCAAGCGAAGGTTTAGATGCTGCAGAGCCAATGGACTCAAACACAGCTTTAAGTCTGGTGCCAGAGATCAAGCAAGAAGTTACAAGTGACAATGAGAATGATGCAGGAGAAAAAGATGATAAAGCCACAAAGAAAACAATGGCTGAATTAACTGGTTATAAGGGGGAAGAAGACTTTGACATAACACTTGTTGAATTCATTGTGCTTCAGAAGTGGTACTTTGATTATGTTAACAGAACACTTAATCACATGAACTTAAATACACTTTCTGATGAATCAGGCATTGATTACAAGAGCCTAACCCTTGATACTACAATGAGTATTGACTGTTCTCTATGTAAGACAAAAGTTAATTCTGTTCTGACACTTGCTACACATATGTCAAGGATTCATTCCGTCAGGTCTGTACCAATCTACTCATGCAGAGTATGTTCTAATGTATTTGATTCTTACAATGAATTTGACAGTCATGTGATAGAAGAATTGCGGGACTTTGATGACTTATGGATGTGTCAGTTCTGTGACAAGGAGTTTGATAACAGAGAAGAAACTAGGAGGCATTTGAATGAGCATTGGGACTCTATTGAATATGACAATTGCTTTAGCCCACACTTAGGGTTCAAGTGTAAATACTGTCAAACCCTATTTTGGAATGAGGCAGATAGGGAAACTCACCAAGTTAGAGTGCATCATATGAAGCACAAAGAAGACTTTTATAAATGTCAGAGCTGTTTGGAAATATTCAGTGATAAGGTGTGGTTTGTCCACCACTACTTGGATCGACATCAAGCCGGTACTGAGGAGGCATTGTTTCTCTTCAAATGCTACGTCTGTAGTCTTGTGCTGCACAGCATTGAAGAGATGAGGAGCCACTTTAAGGCTGATCACCCTGAGGCGAAGAAGATATACTGCACACTAGGCTCCTGTTTGTACAGACCACTCAGTCAGAGGAAATCATTAAAATTACATTTGAAGAGTATGCACGCGGACGACGGTCAAGGCTCGCTTGAAGGTTCCTCGAGCTGCCCGATGTGCGGGCGCGAGTTCACGAGCGCGCGGGCGTGCGGCGCGCACATGTCGCAGGCGCACGGCGCGGGCAAGTTCAAGTGCAAGCTGTGCGTCGAAGTGATGCACACTATGGACGAGAGAAAACTGCATTACCTAATCCGCCATCCCGGCCGGCACCCATTCGAGTGCTCGGAGTGCGGCAAGTCGTTCCAGTACAAGTCCTCGCTGTACATGCACAAGCAGGAGCACGCGCCCAACAAGCAGCCGAACACGTGCAGCTACTGCGGGAAGGTCTTCATGAAAAAGGACTCCTACCGCGAGCACCTGCAAATCCACGAAGGCCCTCGCCACGCGTGCTCCTACTGCCCGATGCGCTTCGTCCAGCGCTCCAACATGTTGCGCCACGAGCGCCGCCACACCGGCGAGCGGCCCTACGCCTGCGCGCAGTGCCCCAGGACCTTCGCCGACAAGGGCGCCTGCACCTCGCACCTGAGGACCCACTCAAAGGACAGATCCTACGCCTGCATTTACTGCGGACAGACATTCGTCCAGAAATCTAAACTTACTTACCACATCAGAAAACATACCGGAGAGAATCTAGAAACGTGCTCAGTATGCGCAAAACTGTTCACAAGCGCGTGCTCGTTGCGCGAACACATGAGAACGCACGAGCGCGCGCAGATGGAGCCCGTGCAGTGCCCGCTCTGTGACCGCAAGTACCAAAACGGGCGCTATATGATAAGGCACCTGCGGACCCTCCACAACCAGGAGCGCTTCTCGTGCCCGCTGTGCCCCAAGTCGCTCACGAGCGTGGCGGGGCTGAGGCACCATGTGGTCACGCACGGAAGGGCCAACATGTACAAGTGCAAAGTGTGTCCAAAGACGTACGCAGTCAGACGAACGCTCATGAAACACCTGCGCAAGCGCCACGGCGTCAAGAACACGGATCTCAACATCAAGGACTGCTTCCTGCAGCTCGACCCTCGCGACTGCAACCTTCCGCTTGACGACGACACCATGACGAAGATCTTCGGAGCCCCCAAGACGAAATCCAACGACATCCTCCTAGGAAACTTTGTTACATTCAAAAAGCAACTCAAAATCTCTGCCAATGTCACTCATGAACAGGACCCAGAAACCGATGAAGAGGAGGAGGAGAAAGACAGCGGAGAGGAGAGCGATGATGCAAGCAAAGCGGACGATCAAGAGGTTGAATTGGAGCCGACGGACTTTGTCAGCGTTAAAATTGAGCATGTGGAGGAGGATGAAGAAGAATTTGATTAA
- Protein Sequence
- MSSEDSDDEPLSVLAAAKKLNPENFEIFDSSDIEVVPIRKRKKKKNYLEPDNLAITIKLCKTRTDTVRVVERPTDVWLYMKDLNPTGPYSCLLCQYWFINRSKLILHYILNHRKNFCGICRYFVPEKEDWINHIKFHTPWPCSQCSLTYPTEPEMREHLSAVHNLVHCCLCHFRTTDDDQYNKHLKQKHNVTTVVNKNDDLWEIDSVGNFVCTLCTKANNPPTTFFGHYMGYHHFTLKCLTNIIAGTEPPFSVEGANVSSDFIEGQLKIQDKIGYVDIDKKPSEGLDAAEPMDSNTALSLVPEIKQEVTSDNENDAGEKDDKATKKTMAELTGYKGEEDFDITLVEFIVLQKWYFDYVNRTLNHMNLNTLSDESGIDYKSLTLDTTMSIDCSLCKTKVNSVLTLATHMSRIHSVRSVPIYSCRVCSNVFDSYNEFDSHVIEELRDFDDLWMCQFCDKEFDNREETRRHLNEHWDSIEYDNCFSPHLGFKCKYCQTLFWNEADRETHQVRVHHMKHKEDFYKCQSCLEIFSDKVWFVHHYLDRHQAGTEEALFLFKCYVCSLVLHSIEEMRSHFKADHPEAKKIYCTLGSCLYRPLSQRKSLKLHLKSMHADDGQGSLEGSSSCPMCGREFTSARACGAHMSQAHGAGKFKCKLCVEVMHTMDERKLHYLIRHPGRHPFECSECGKSFQYKSSLYMHKQEHAPNKQPNTCSYCGKVFMKKDSYREHLQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACAQCPRTFADKGACTSHLRTHSKDRSYACIYCGQTFVQKSKLTYHIRKHTGENLETCSVCAKLFTSACSLREHMRTHERAQMEPVQCPLCDRKYQNGRYMIRHLRTLHNQERFSCPLCPKSLTSVAGLRHHVVTHGRANMYKCKVCPKTYAVRRTLMKHLRKRHGVKNTDLNIKDCFLQLDPRDCNLPLDDDTMTKIFGAPKTKSNDILLGNFVTFKKQLKISANVTHEQDPETDEEEEEKDSGEESDDASKADDQEVELEPTDFVSVKIEHVEEDEEEFD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01503207;
- 90% Identity
- -
- 80% Identity
- -