Uoli009968.1
Basic Information
- Insect
- Udea olivalis
- Gene Symbol
- -
- Assembly
- GCA_947369235.1
- Location
- OX376368.1:8001444-8006851[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 4.5 4.5e+02 2.4 2.9 1 23 28 50 28 50 0.86 2 24 0.086 8.6 7.8 0.2 2 23 78 100 77 100 0.91 3 24 6e-05 0.006 17.7 2.9 1 23 123 145 123 145 0.98 4 24 0.16 15 7.0 0.1 2 23 150 171 150 171 0.95 5 24 1.1e-06 0.00011 23.2 0.9 1 23 176 199 176 199 0.96 6 24 3.3 3.2e+02 2.8 3.3 2 23 209 231 208 231 0.87 7 24 0.0011 0.11 13.8 0.8 1 23 237 260 237 260 0.97 8 24 0.0055 0.54 11.6 3.6 2 23 265 286 264 286 0.96 9 24 4.8e-06 0.00047 21.2 3.9 1 23 292 314 292 314 0.98 10 24 0.00094 0.093 14.0 0.5 2 23 406 428 405 428 0.95 11 24 2e-05 0.002 19.3 2.7 1 23 451 473 451 473 0.98 12 24 0.001 0.1 13.8 0.5 2 23 478 499 477 499 0.97 13 24 9.7e-05 0.0097 17.1 3.8 2 23 505 527 504 527 0.94 14 24 0.24 24 6.4 4.3 2 23 537 559 536 559 0.95 15 24 0.0056 0.55 11.6 0.4 1 23 615 637 615 637 0.98 16 24 0.014 1.4 10.3 0.4 2 23 665 687 664 687 0.93 17 24 0.00021 0.021 16.0 4.0 1 23 711 733 711 733 0.98 18 24 0.0084 0.84 11.0 0.5 3 23 739 759 738 759 0.96 19 24 0.15 15 7.1 3.4 1 23 764 787 764 787 0.91 20 24 0.33 32 6.0 4.2 1 23 797 820 797 820 0.95 21 24 0.0041 0.41 12.0 1.2 1 23 826 849 826 849 0.96 22 24 1.8e-05 0.0018 19.4 0.4 3 23 855 875 853 875 0.97 23 24 2.5e-06 0.00024 22.1 0.6 1 23 881 903 881 903 0.98 24 24 0.028 2.8 9.3 0.0 1 23 909 932 909 932 0.93
Sequence Information
- Coding Sequence
- ATGACCGTCTCTGAGCGGCAGAACGCGGCTGTCATACTAGAGAATACTACAGCTAGACCTTTCGTCTACTGCAGATATTTTTTCAAATGCTTCTTCTGTCATGAACAGTTCTCAGAAATACACGCTGTACTACAACACAGCCTTGGTCACAAAACACCAGACCGTAACACTATTCTGAAAGACTTGCTACCAAAGGGGAAAAGAACTGTAAAAGTTGACATTTCTGAGCTTAAATGCAGAATATGCCAGCAGGATTTCAAGGACTTGGATGTAATTCGCAAGCATTTAATTGCAGAACATGACATGCCGTTCACTCAGTCTGGCAATGGAATTGTTGCCTACAATTTGACGCCTAAGAACGGCCAGTTTACTTGCCACTTATGTAATAAGATATTCCAAACTTTTATACTACTAAACAGACACATGAACGTTCATTTTAGTAACGCAGTATGCGAGACGTGCGGGGCTGGTTTCATGACGTACCAACGCTTAATACAGCATAAAGAAATTCACGCACCAGGAGGATATCCGTGTAAAAAATGTGATAAAGTGTATACTACTAATTCCAATCTTAAATACCACGTAGAAAAGGCACATGAGGGAGCTACTAAAATGCGAATGTTACGATGCGCGCACTGTCCGGAACGGTTCTCTGAACATTTTAGGAAGTTAAAACATTTGAAAGATGTACACGGAATTACATTCACCTTCGAATGCGAAGAGTGTAAATCGGTGTTCCCTAGTCGAAGAGCTTTGACCATGCACACTAATAAGTTTCATACGCAGAAAACTCAATGTGAAATTTGCAAGAAGAGTTTTAGTTGTGTAACAACGCTGAAGAAGCATATGGTTTCTCACACGGGTGAACGGAATTTCGTTTGTTCGTTATGTCAAAAGGCGTATAGGCATCAGAAGAGTTTGAAACTGCACATGAGGACACACGTTGACGACAATAGACTGGCACCAGGAACGAGCATATGGCAACTAACAGTCCTGGAAAGGAGAAACGCAGCGGCCCTCATTCACTATACAACAGTCAGACCGTTCATTTTCATGGGCTCGTGTTTTAAGTGTTTCTTCTGCCGAGAATACCACTTAGAAGTGAGCTCTCTGCTCCAGCATATGACGGAGCATAACGTACAGGGGAAGAATAGAATATTAGAGAAATACGTACATAAAAGCAAGCGTTGCTTGCAAGTGGATATATCGCATTTGAAATGTAAAATTTGCGGGAATATGTTCAAAAATTTGGAAACAGTAAGAAGCCATTTGGAAAAAGAGCACGAAAAAGAATTTTGTCCTGCTGGTAACGGAATGACGGAGTACAATATGGAAGAGAAGAATGGAATGTTCTCCTGCCATATTTGCGGGGAAGCATTTCACAGGTTTACGTTGCTTAATGCACATATGAACAGTCATGTGGGGAAGGTTGTTTGTGAGAACTGTGGACAGGGTTTTCTCAACCAGCATTTACTTATGAAGCACATGGAGAGCCATTTAATAAAAAAGTTGAAATGCAAACATTGTGATAAAATGTTCGATAAGAGAAGCCAACTGAAATACCACACGGAGATTACTCATGAAGGAAAAGATCGGGTCAGGCTGAAGAAATGCACTCTCTGTACTAAAACGTTTAAAGAACATTACAGGAAAGTGATCCATATGAGAGAATCTCATGGAATCAGAAAAAACTTTCCATGTCACGTGTGCAAGACTACAGGCGAGAAGCGGCGCCCTGCATCCAGTATTTGGTCCATGACACTCAAAGAGCGAGAAAACGCTGGCATCCTGCTGCACTCCACCACAGTTAAACCCTTCACTTACATGTCCTTCCCACTTCGCTTCAAGTGCTTCTTTTGCGAAAAACTGTTCCCAGATTTGGACGCACTCCTATCACACACTAGCATCCACGAAGTGCCAGACGTGAAGGAGATGCTACAAGGATTGCTAAAGAAAGGAAAGAAGACTATCAAAGTCGATATATCAGAACTGAAATGCAAGTTGTGCGAAACTCCTTTCACAAGCGTAGATGATGCAAGGCGACACCTATCAGAGAAACATGAAAAGAAATTCAACGTGGACTCTGGCAACGGCATGATCGTTTATAGTTTGAAAACAAAAGATGGCATATTTTCCTGCCATTTATGCACTCAAACTTTCACCAGTTTCTTCCTTCTAAACAAACACATCAACGTACATTTCAGCAATGCCATTTGTGAGTGGTGCGGCAAAGGGTTCGTGTCACATCAGAGATTGTTGCAGCACAAAGAAATACACCTCCGAGGGAAGTTTCACTGCGAGAAATGCAAAGTATCGTTTGATAGTCCGGCTAAATTTAAGTACCACAACGATAGAACGCACGGTAAACCGAACAAGATTTATAATATTTACAACTGCCAGCAATGTTCGGCTAGATTCGACCACCATTATGAAAAAATGAAGCATATGAGCGAAGTCCACAATGTCAATTTTGAATACAACTGCGAAACGTGTAATTCTGTATTCAAAACCAGAAAGTCGTTGGCTGGCCATCGAATAAAGTACCATTTGCAGAGTATCGCTTGCGAAGTGTGTAAGAAGCCGTTTGCTGAGCGAGGACATTTGAAGAAGCACATGGCGATGCATACAGAAGAAAGGAATTTTCCGTGTCCTCTTTGCAATAAGACTTATAAATATGAGAAGAACGTTAAAGCACATATGCGTGTTCACAACCCAGACTGGAAGTTTGCCTGCGCGGAGTGTTGGATAGGCTTTGTCGGCAAAATTGAGTTTCGAAAACACATGGCAGAAATACATCCTCAAAATACTTAG
- Protein Sequence
- MTVSERQNAAVILENTTARPFVYCRYFFKCFFCHEQFSEIHAVLQHSLGHKTPDRNTILKDLLPKGKRTVKVDISELKCRICQQDFKDLDVIRKHLIAEHDMPFTQSGNGIVAYNLTPKNGQFTCHLCNKIFQTFILLNRHMNVHFSNAVCETCGAGFMTYQRLIQHKEIHAPGGYPCKKCDKVYTTNSNLKYHVEKAHEGATKMRMLRCAHCPERFSEHFRKLKHLKDVHGITFTFECEECKSVFPSRRALTMHTNKFHTQKTQCEICKKSFSCVTTLKKHMVSHTGERNFVCSLCQKAYRHQKSLKLHMRTHVDDNRLAPGTSIWQLTVLERRNAAALIHYTTVRPFIFMGSCFKCFFCREYHLEVSSLLQHMTEHNVQGKNRILEKYVHKSKRCLQVDISHLKCKICGNMFKNLETVRSHLEKEHEKEFCPAGNGMTEYNMEEKNGMFSCHICGEAFHRFTLLNAHMNSHVGKVVCENCGQGFLNQHLLMKHMESHLIKKLKCKHCDKMFDKRSQLKYHTEITHEGKDRVRLKKCTLCTKTFKEHYRKVIHMRESHGIRKNFPCHVCKTTGEKRRPASSIWSMTLKERENAGILLHSTTVKPFTYMSFPLRFKCFFCEKLFPDLDALLSHTSIHEVPDVKEMLQGLLKKGKKTIKVDISELKCKLCETPFTSVDDARRHLSEKHEKKFNVDSGNGMIVYSLKTKDGIFSCHLCTQTFTSFFLLNKHINVHFSNAICEWCGKGFVSHQRLLQHKEIHLRGKFHCEKCKVSFDSPAKFKYHNDRTHGKPNKIYNIYNCQQCSARFDHHYEKMKHMSEVHNVNFEYNCETCNSVFKTRKSLAGHRIKYHLQSIACEVCKKPFAERGHLKKHMAMHTEERNFPCPLCNKTYKYEKNVKAHMRVHNPDWKFACAECWIGFVGKIEFRKHMAEIHPQNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01503182;
- 90% Identity
- -
- 80% Identity
- -