Ufer029203.1
Basic Information
- Insect
- Udea ferrugalis
- Gene Symbol
- -
- Assembly
- GCA_950022985.1
- Location
- OX465545.1:2555774-2561115[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.0098 0.93 10.9 0.4 2 23 78 100 77 100 0.92 2 26 0.0001 0.0098 17.2 2.7 1 23 123 145 123 145 0.98 3 26 0.19 18 6.9 0.1 2 23 150 171 150 171 0.95 4 26 5.3e-06 0.0005 21.2 1.3 1 23 176 199 176 199 0.96 5 26 3.9 3.7e+02 2.8 3.3 2 23 209 231 208 231 0.87 6 26 0.0013 0.12 13.7 1.2 1 23 237 260 237 260 0.97 7 26 0.0028 0.27 12.6 3.6 2 23 265 286 264 286 0.97 8 26 0.0044 0.41 12.0 1.0 2 23 377 399 376 399 0.95 9 26 0.0011 0.1 13.9 4.1 1 23 422 444 422 444 0.98 10 26 0.00027 0.026 15.8 0.6 2 23 449 470 448 470 0.97 11 26 5.4e-05 0.0051 18.0 2.5 1 23 475 498 475 498 0.96 12 26 0.2 19 6.8 5.0 2 23 508 530 507 530 0.96 13 26 0.013 1.2 10.5 4.7 1 23 536 559 536 559 0.96 14 26 1.7e-05 0.0016 19.6 3.2 1 23 563 585 563 585 0.98 15 26 0.00019 0.018 16.3 2.5 1 23 591 613 591 613 0.98 16 26 0.57 54 5.4 0.2 1 15 619 633 619 636 0.86 17 26 1.5 1.5e+02 4.0 0.2 1 23 678 700 678 700 0.96 18 26 0.01 0.96 10.9 0.4 2 23 728 750 727 750 0.93 19 26 0.00025 0.024 15.9 4.0 1 23 774 796 774 796 0.98 20 26 0.01 0.97 10.9 0.5 3 23 802 822 801 822 0.96 21 26 0.18 17 7.0 3.4 1 23 827 850 827 850 0.91 22 26 0.4 38 5.9 4.3 1 23 860 883 860 883 0.95 23 26 0.0049 0.47 11.9 1.2 1 23 889 912 889 912 0.96 24 26 2.2e-05 0.0021 19.3 0.4 3 23 918 938 916 938 0.97 25 26 3e-06 0.00028 22.0 0.6 1 23 944 966 944 966 0.98 26 26 0.0049 0.47 11.9 0.0 1 23 972 995 972 995 0.93
Sequence Information
- Coding Sequence
- ATGACAATATCTGAGCGGCAGAACGCCGCTGCCATACTAGAGAACACCACAGCTAGACCTTTCGTCTACTgcagatattttttcaaatgctTCTTCTGTCACGAACAGTACCCAGAAATACATGCTGTACTCCAACACACCCTGAGCCACGAAACGCCAGATCGTAACACAATTTTGAAAGACTTGCTGCCCAAAGGGAAAAGAACTGTGAAAGTTGACATTTCTAAGCTTAAATGCAGAATATGCCAACAGGATTTCAAGGACTTAGATGAAATTCGAAAGCATCTAATTGCGAAACATGAAACAACTTTCACTCAGTCTGGTCATGGTGTTGTGGCGTACAATTTGACACCAAAGAACGGCCAATTCTCCTGCCatttatgcaataaaatatttcaaacgtTTATTCTGCTTAACAGACACATGAATGTACATTTCAGTAACGCGGTTTGTGAGACGTGCGGGGCCGGTTTTATGACGTATCAGCGCCTGATCCAGCATAAAGAAATCCACGCACCAGGAGGATATCCATGTAAAAAATGCGATAAAATCTACACCACTAATTCGAATCTCAAATACCATGTAGAAAAGATGCATGAAGGTGCTACTAAAATGCGTATGCTGCGATGCGCCCACTGCCCGGAGAGGTTCTCAGAACATTTCAGGAAGTTGAAACACCTGAAGGATGTACACGGGATAACATTCACCTTTGAATGTGATATATGCAAATCTATATTCACTAGTCGAAGAGCATTGACCATGCACACGAATAAGTACCATACAGTGAAAACTCAGTGTGAAATTTGTAAAAAGAGTTTTAGCTGTGTAACAACTCTTAAAAAGCACATGATTTCTCATACAGACATTAGGCTGGCACAAGGAACGAGCATATGGCAACTAACGGTGTCAGAACGGAGAAATGCGGCAGCTCTCATTCACTACACCACAGTCAGACCATTCATATTCATGGGCTCGTGTTTCAAGTGCTTCTTCTGCTTAGAATACCACTGGGAACTGAGCACTCTGCTCCAGCATACAACGACACACGACGTTCAagggaaaaataaaatattagagAAATACGTGCACAAAGGCAAGCGTTGCTTGCAAGTTGATATATCACAATTAAAATGCAAGATATGCAGCAGAACATTCGAAAATTTACAAACTATTAGAAGCCATTTAGAAAAGGAGCATGATAAAGAGTTTTCACCAGCTGGTAACGGAATGACAGAGTACAATATGGAGGAGAAAAACGGAATGTTTTCGTGCCACATTTGCGATGTAGAATTCCACAACTTTACTTTGCTGAACACCCATATGAACAGTCACGTGGGTAAAGTTGTTTGTGAGAACTGTGGAGAGAGTTTCCTCAACCAGCATCTGCTAATGAAGCACATGGAAAGTCATTTAATAAGGAAGTTCAAATGCCAAAACTGTGATAAGATGTTTTACAAGAGGAGCCAACTTAAATATCACACAGAGATCATTCATGAAGGGAAAGAAAGGGTTAGGTTAAAGAAATGTCTGCATTGTTCTCAAACGTTCAGAGAACACTATAGCAAGATGGTCCATATGAGAGAGGTACATGGAATCAGCAAAAACTTTCAATGTCACTTATGCAAGAGTAATTTCAGTACTCGAAGAGCATTGACGGAGCATACAACGAGATTTCATACAGAGAAGTATAGGTGTGACGTGTGCACTAAATGCTTCAGCATAGAGTCCAAATTGAAGCAACATATGCGAGGGCATACTGGTGAAAGGAGTTTTATATGTCCGATTTGCAAAAATGCATACATGCACAAAATGACGCTGAAAAAACACATGAGGAGTCACAGCACGGAGTTTAAGTTCGTCTGTTCGGAATGCGGAGCAGGATTTCATAACAAGAATGAATATGCTACTGGCGAGAAGCGGCGACCTGCGTCCAGCATTTGGTCCATGACCCTTAAGGAGCGCGAAAACGCCGGCATCCTCCTGCACTCCACCACAGTGAAACCTTTCACTTACATGTCCTTCCCTCTCCGATTCAAGTGCTTCTTTTGCGACGACTTGTTCCCCGAATTAGACGCACTACTCCAGCACACTAGCATCCATGAAGTGCCAGATGTAAAAGAGATGCTGAAAGGATTATTaaagaaaggaaagaaaacTATCAAGGTTGATATTTCTGAACTGAAATGCAAGTTGTGCGAAACTCCTTTCACAAGCGTAGACGAGATTAGACGGCACTTATCAGAAAAACATGAGAAGAAATTCAACGTGGAGTCTGGGAACGGCATGATAGTTTACAGCTTGAAAACAAAAGATGGCATCTTTTCTTGCCATTTGTGCACCCAAACCTTCACCAGCTTCTTCCTTCTTAACAAACACATCAACGTACATTTCAGCAATGCCATCTGTGAGTGGTGTGGCAAAGGGTTCGTGTCGCATCAGAGATTATTACAGCATAAAGAAATACATCTTCGAGGAAAGTTTCACTGTGAAAAATGTAAAGTATCGTTTGATAGTCCGGCTAAATTTAAGTATCACAATGATAGAACTCACGGGAAACCCAACaagatttataatatttacaacTGCCAACAATGTTCCGCAAGATTCGATCACCATTATGAGAAAATGAAGCATATGAGCGAAATTCACAACGTCAATTTCGAATATAACTGTGAAACATGTAACTCTGTGTTTAAGACTAGAAAGTCGTTGGCTGGTCACCGTATCAAGTATCATTTGCAGAGTATCGCGTGCGAAGTTTGTAAGAAACCTTTCGCTGAACGAGGGCATTTAAAGAAGCACATGGCGATGCATACAGAAGAGAGGAACTTTCCGTGCCCATTATGCAATAAGACTTACAAATATGAGAAGAACGTCAAAGCGCATATGCGGGTACATAATCCAGATTGGAAGTTTGCTTGCGCGGAGTGTTGGATAGGATTTGTGAGCAAAATTGAGTTTCGAAAACACATGGCGGAATTGCATCCTCAAAATACGTAG
- Protein Sequence
- MTISERQNAAAILENTTARPFVYCRYFFKCFFCHEQYPEIHAVLQHTLSHETPDRNTILKDLLPKGKRTVKVDISKLKCRICQQDFKDLDEIRKHLIAKHETTFTQSGHGVVAYNLTPKNGQFSCHLCNKIFQTFILLNRHMNVHFSNAVCETCGAGFMTYQRLIQHKEIHAPGGYPCKKCDKIYTTNSNLKYHVEKMHEGATKMRMLRCAHCPERFSEHFRKLKHLKDVHGITFTFECDICKSIFTSRRALTMHTNKYHTVKTQCEICKKSFSCVTTLKKHMISHTDIRLAQGTSIWQLTVSERRNAAALIHYTTVRPFIFMGSCFKCFFCLEYHWELSTLLQHTTTHDVQGKNKILEKYVHKGKRCLQVDISQLKCKICSRTFENLQTIRSHLEKEHDKEFSPAGNGMTEYNMEEKNGMFSCHICDVEFHNFTLLNTHMNSHVGKVVCENCGESFLNQHLLMKHMESHLIRKFKCQNCDKMFYKRSQLKYHTEIIHEGKERVRLKKCLHCSQTFREHYSKMVHMREVHGISKNFQCHLCKSNFSTRRALTEHTTRFHTEKYRCDVCTKCFSIESKLKQHMRGHTGERSFICPICKNAYMHKMTLKKHMRSHSTEFKFVCSECGAGFHNKNEYATGEKRRPASSIWSMTLKERENAGILLHSTTVKPFTYMSFPLRFKCFFCDDLFPELDALLQHTSIHEVPDVKEMLKGLLKKGKKTIKVDISELKCKLCETPFTSVDEIRRHLSEKHEKKFNVESGNGMIVYSLKTKDGIFSCHLCTQTFTSFFLLNKHINVHFSNAICEWCGKGFVSHQRLLQHKEIHLRGKFHCEKCKVSFDSPAKFKYHNDRTHGKPNKIYNIYNCQQCSARFDHHYEKMKHMSEIHNVNFEYNCETCNSVFKTRKSLAGHRIKYHLQSIACEVCKKPFAERGHLKKHMAMHTEERNFPCPLCNKTYKYEKNVKAHMRVHNPDWKFACAECWIGFVSKIEFRKHMAELHPQNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01504092;
- 90% Identity
- -
- 80% Identity
- -