Uoli008885.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Udea olivalis
Gene Symbol
-
Assembly
GCA_947369235.1
Location
OX376358.1:10701929-10719316[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 8.2e-05 0.0082 17.3 0.1 3 23 134 154 133 154 0.97
2 16 7.5e-07 7.4e-05 23.7 1.2 1 23 160 182 160 182 0.99
3 16 4.7e-06 0.00046 21.2 2.7 1 23 188 210 188 210 0.99
4 16 3.2e-06 0.00032 21.8 2.6 1 23 225 247 225 247 0.98
5 16 9.4e-05 0.0093 17.1 0.7 1 23 262 284 262 284 0.98
6 16 4.3e-05 0.0042 18.2 3.1 1 23 299 321 299 321 0.98
7 16 3e-07 2.9e-05 25.0 1.5 1 23 336 358 336 358 0.99
8 16 2.2e-05 0.0022 19.1 0.2 1 23 365 387 365 387 0.99
9 16 9.3e-06 0.00092 20.3 2.1 1 23 393 415 393 415 0.99
10 16 0.03 3 9.3 1.8 1 23 422 444 422 444 0.98
11 16 5e-07 5e-05 24.3 2.3 1 23 450 472 450 472 0.99
12 16 0.035 3.5 9.1 1.8 1 23 479 501 479 501 0.98
13 16 2e-06 0.0002 22.4 1.5 1 23 507 529 507 529 0.99
14 16 0.0017 0.16 13.2 0.3 1 20 535 554 535 557 0.93
15 16 8.6e-05 0.0086 17.3 0.9 2 23 564 585 563 585 0.96
16 16 2.9e-06 0.00029 21.9 1.4 1 23 591 614 591 614 0.97

Sequence Information

Coding Sequence
ATGTTTGAACAGCAGATCAAAGCAGAGCCTATGGGTTTCTACACGCCTCATTCCCACATACACTCCGGCCCCCCAACAATAGTCCGGTCTGACTCCAGTCATCCCATTATAAACATGAACTCTCACCACCAATCGCACCAAGAGGACTCCAAGGACAGTCTTATAGTACAACAACACGTACAACAGCACCAGGAGCTTATGGAACAACACCAACAACAACAAGATTTACAGCAGCAAGACGATGAGTTAAGTTTTAAAGGGATGGATGATGAAGGAGTGGAAATGGAAATGGATAGCCGACAGTGCTCACAGGGCATGGGAGTAGACATGGGATCAGTGCAAACCAAAATGGAAGTGTCAAATGGTGGTCAGTCTACGCCACGCTCTAAACCTCAAGCCTGCAAGGTCTGTGGTAAAGTGCTATCGTCTGCTTCATCTTACTATGTCCACATGAAGCTTCACTCAGGAAACAAGCCCTTTCAGTGTACTGTTTGCGACgcagctttctgtcgcaagccgtacctggaggtgcacatgcgcacgcacacgggcgagcgccccttccagtgcgacctctgcctcaagcgcttcacacaaaagtccagtctcaacacgcacaaacgcgtccacaccgATGAGcacatgcgcgcgttgatggtgaaggaccgcccctacaagtgtgacctctgtcagatgcggttcacgcagagctccagcctcaacagacacaagaaaattcatacggAGGAGCACAAACGCGCGCTGCTGGCTAAGGAACGTCCCTACCAGTGCGGCGTCTGCTATCTGAGATTCACCCAGAAATCAAGTTTGGGCCGGCACGGAAAAATACACACCGAGGAGCACAGGCGAGCCCTGTTAGAGAAAGTgcggccgtaccagtgccacatctgttttatgcgcttcactcagaagtccagcctgggccgtcatgggaaaatacacactgAGGAGCACATCCAATCGCTGATCAACAAAGTgcgcccctatcagtgcgacatctgtgacaagcggttcacgcagaagtccagcctgggcactcataaacgtatacacactgtgcaagggcgtcctttcaagtgcgggcaatgcccggcggcgttcgcccgccggccctacctggatactcacatgcgcacgcacacaggcgagcggccgtatcagtgcgacgcgtgtctgaagcgcttcacgcagaagtccagcctcaatatacataagaggacgcacacagtccaggggagaccgttccagtgcctgtcgtgccccgccgccttcacctgcaagcaatacctggagattcacacgcgcacgcacaccggggagcgcccgtatcagtgcgacatctgcttgaagcgcttcacgcagaaatccagtctgaacatccacaagcggacccattcagtgcaaggccgcccgttccaatgtctgcagtgtccggccgcctttacatgcaagcagtatctggaaatacacaaccgtacgcacacgggcgaacgcccttaccagtgtgacgtatgcctcaagagattcgcgcaaaaatccacactcaacatacacaaacgaacgcacacagGGGAACGACCGTATGCTTGTGATATTTGTCAGAAACGATTTGCTGTGAAGAGCTATGTAACAGCGCACAGATGGTCCCACGTGGCCGACAAGCCGCTGAACTGCGACCGCTGCTCGATGACGTTCACGTCGAAGGCGCAGTTCGCGCTGCACATCCGCACGCACACCGCCGGGCCCTGCTACGAGTGCAGCGTCTGCGGACGCACCTTCGTCAGGGACAGCTATCTCATAAGGCATCACAACCGCGTGCACCGCGAGAACCACAGCAACATGTCGGCCAACAGCATCGGGACCATCAACAGCGTCGCCACCAACGCTAACAACTCCAACACCAACTACAACTCGCCCGGCGTTTGTGACTTAAGCTTTGGGCCAATGGTGAATCGCTACATGACTTCTCAAGGCACGCAGGTGTCGATGCAAGACACGAGCAAGATGTCTGCTATGTCTCCGCAGTCTATCGCGTCAATATCGTCGCCCCCGCCCCCGCACACACCAACACCGCAGCCCCAGATGTCTGGACAGATGCATCTTGGAGACTGA
Protein Sequence
MFEQQIKAEPMGFYTPHSHIHSGPPTIVRSDSSHPIINMNSHHQSHQEDSKDSLIVQQHVQQHQELMEQHQQQQDLQQQDDELSFKGMDDEGVEMEMDSRQCSQGMGVDMGSVQTKMEVSNGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYKCDLCQMRFTQSSSLNRHKKIHTEEHKRALLAKERPYQCGVCYLRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTVQGRPFKCGQCPAAFARRPYLDTHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKAQFALHIRTHTAGPCYECSVCGRTFVRDSYLIRHHNRVHRENHSNMSANSIGTINSVATNANNSNTNYNSPGVCDLSFGPMVNRYMTSQGTQVSMQDTSKMSAMSPQSIASISSPPPPHTPTPQPQMSGQMHLGD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00010401;
90% Identity
iTF_00075763;
80% Identity
-