Uoli030005.3
Basic Information
- Insect
- Udea olivalis
- Gene Symbol
- -
- Assembly
- GCA_947369235.1
- Location
- OX376355.1:1167791-1168421[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.00085 2.6 8.5 0.0 5 22 11 28 8 37 0.84 2 3 0.00086 2.7 8.5 0.0 5 22 63 80 60 89 0.84 3 3 0.00089 2.8 8.4 0.0 5 22 115 132 112 140 0.84
Sequence Information
- Coding Sequence
- ATGGCGTCGTGGTGCGGCGGCTCGGGCGGCGCGCCCTGTAGCTCGCGCTTACCTGCAGGATGGCGTCGTGGTGCGGCGGCTCGGGCGGCGCGACCTGTAGCTCGCACTTACCTGCAGGATGGCGTCGTGGTGCGGCGGCTCGGGCGGCGCGACCTGATGGCGTCGTGGTGCGGCGGCTCGGGCGGCGCGCCCTGTAGCTCGCGCTTACCTGCAGGATGGCGTCGTGGTGCGGCGGCTCGGGCGGCGCGCCCTGTAGCTCGCGCTTACCTGCAGGATGGCGTCGTGGTGCGGCGGCTCGGGCGGCGCGCCCTGATGGCGTCGTGGTGCGGCGGCTCGGGCGGCGCGCCCTGTAGCTCGCGCTTACCTGCAGGATGGCGTCGTGGTGCGGCGGCTCGGGCGGCGCGCCCTGTAGCTCGCGCTTACCTGCAGGATGGCGTCGTGGTGCGGCGGCTCGGGCGGCGCGCCCTGTAG
- Protein Sequence
- MASWCGGSGGAPCSSRLPAGWRRGAAARAARPVARTYLQDGVVVRRLGRRDLMASWCGGSGGAPCSSRLPAGWRRGAAARAARPVARAYLQDGVVVRRLGRRALMASWCGGSGGAPCSSRLPAGWRRGAAARAARPVARAYLQDGVVVRRLGRRAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01503905;
- 90% Identity
- iTF_01503906; iTF_01503905;
- 80% Identity
- -