Ufer007405.2
Basic Information
- Insect
- Udea ferrugalis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_950022985.1
- Location
- OX465520.1:17568403-17585824[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.6e-75 1.4e-70 238.8 20.8 1 297 121 414 121 417 0.89 2 2 2 3.3e+04 -7.2 14.3 1 49 413 460 411 487 0.59
Sequence Information
- Coding Sequence
- ATGGGCAAACAGTCCAAAATGGCACCTCCTGACAATACTGATGAGGAAAGCGGCGACGCCTTCACCGATGGTGATTTCGATGAGAGCGGTGACGAAACAGTGATTGAAAGGAGAGAAGACGCACAGAGGTCGTATGTTCCTGTCAATGAAACCGTAAACAAAGATGTGCAGAGAACTATTGATGCGGCCTCTTCGAAGCCACATTCTAATGGCCTACCTAAATACAATGGACTTAAAAACGGTGAATCCAGTGGTGTGGATTATCGCAGTAATGGTGATGCTGGAAGTGACATACGAAGGGACTCCCACGGTGATCAGAACCCGTCAATAGTAGGAATAATCGGTGATCAACACAATCATGCGGAACAGCGGCTAGCAGCGCGACGGGCCGCCCGAGCCGAGGCGCGGGAGATACGCATGCGGGAGCTAGAGCGGCAGCAGCGCGAGCAGGAGGACCATGCCGACAAGGCGTACGACATGTACGCAGACACCGTGGGGCGGCGCGCCGGGTCGCGGCTGGCAGGGCTGAGTCCGGCCGGTCTGCACTCCCCGCGGCGCAGCTCCGAGGACTCGGCTGACGATGTCTTCAACATTAAGGACCTTAGGCACGAGCTGAAGGAAGTAGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCTCAGCTGGACAACGACAAGGCGGCGCAGGGCTACCAGCTCGAGCTGCTCAAGGACCGGATAGAGGAGCTGCAGGAGGAGTACGCGCAACTGGCGCGGGAACACAGAGAGAAGTGCTCAGCTTACGAGCGCCTGCGCCGCGAGCACACGTCGCTAGAGCGAGAGGTCGCGTGCGCAAGGGACGCCGTGCGAGCTCGCGACGCCGCCGCCGACGCCGCCGGGTTCGCCTTCGTGGACGCGCCGCCCGCCGCCAGCGTGCCCGGCTTCGGCGACGTGCCGCCGCTGGCGCTGGTCGTGCCCGGCTTCGGCGACGTGCCGCCGCTGGCGCTGGTGTCGCACCAGGCCTCGCGCCTGCTGCAGGCCGCCGGCGAGGGCACACTGGACGTCCGGTTGCAGAAGCTGCTGAGCTCGAAGGCGTCGCTGGAGTCGGAGGTGCGCAAGCTGAAGCTGCAGCTGAACGAGGAGCGCTCAGCGAGGCAGAACGGCGTCGCCAGCCACCACGACCAGGAACACGAGACCGAACTGGAAAGTCTCCGACGCTGCGTGTCCGAAGCCAAGGCGCGTGCGGCGCGAGCTGAGGCCGAGGCAGCTCTGCAGGGCGCCGGAGTGGCGCGACTCGAGGCACAAGTAGCGCGGCTCCGAGCGCGCCAGGACCACCAGGACGAGCACGAGGAGGCGCTCAAGCAGGAGCGGCGCAAGCTGCAGCGGGAGGCGCGGGAAGCTCTCAACCGAGTAGAAGAGCTGGAGACAGAGAACAGCCATTTAACGAAGCGGCTGGACAAACTGAAGAACGCCAAGTCTCAGCTGCTGAAGGATCTGTGA
- Protein Sequence
- MGKQSKMAPPDNTDEESGDAFTDGDFDESGDETVIERREDAQRSYVPVNETVNKDVQRTIDAASSKPHSNGLPKYNGLKNGESSGVDYRSNGDAGSDIRRDSHGDQNPSIVGIIGDQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYADTVGRRAGSRLAGLSPAGLHSPRRSSEDSADDVFNIKDLRHELKEVEEKFRKAMILNAQLDNDKAAQGYQLELLKDRIEELQEEYAQLAREHREKCSAYERLRREHTSLEREVACARDAVRARDAAADAAGFAFVDAPPAASVPGFGDVPPLALVVPGFGDVPPLALVSHQASRLLQAAGEGTLDVRLQKLLSSKASLESEVRKLKLQLNEERSARQNGVASHHDQEHETELESLRRCVSEAKARAARAEAEAALQGAGVARLEAQVARLRARQDHQDEHEEALKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSQLLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -