Ufer012528.1
Basic Information
- Insect
- Udea ferrugalis
- Gene Symbol
- -
- Assembly
- GCA_950022985.1
- Location
- OX465525.1:14583774-14584535[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-10 1.6e-07 31.7 0.0 6 36 15 45 11 48 0.93
Sequence Information
- Coding Sequence
- atggACAGAAAGAAACGTAAGTGTTATACTTATGCGCAAGTGGCTGAAGCACTTTTATCAATCCGGCAAGGCATGAGTATTTACAAAGCCTCCAGACaatataatataccagagaccACGCTACGGAGTAAACGAGATGAGCTTTACCAGAATGAACATTGTGGTAAGCAGCCAGTACTTAACGTAAACGAAGAGAAACAAATTGTAGATTGGATACATTACCTTGGAAAATGTGGCTTTCCAGTAACAAAAGATCAACTATTACACACTGTGTCTAAGTTAGTTGAAAACCTGCAGCGCCCTAATCCGTTTAAAGATGGAGTTCCAGGAAAAAAATGGTTTTCTGGTTTTATGCTACGACATCCAACAGTGTCAAAACGTGTGTCACAAAATCTTCCCACTAGTAGAAACCAAGTTACGGAAGTTGCATTGCGAGCATGGTTTGATCGAGTCGGatcatattttaaagaaaacgatTTGCTACAAGTGCTTCAAGACCCAAAACGTATATTCAACTGTGACGAAACTGGGTTTTTTCTATGTCCAAAAGACAAGCAAGTTTTAGTAAAAAAGGGTAGTAAAAGAGTATACAATCGCGTTGCAAATGACGAAAAAGAATGCTTGACCGTATTAGTCAATGTGTCAGCAGATGGTAATGTAGCTCCACCAATGGTACTTTTCCCTTACAAGAGGGTACCTCCCAATATCATGTCTACGGTTCCTTCGTGGTGGGGACTGGACCCCCAGAATCGGGCTGGATGA
- Protein Sequence
- MDRKKRKCYTYAQVAEALLSIRQGMSIYKASRQYNIPETTLRSKRDELYQNEHCGKQPVLNVNEEKQIVDWIHYLGKCGFPVTKDQLLHTVSKLVENLQRPNPFKDGVPGKKWFSGFMLRHPTVSKRVSQNLPTSRNQVTEVALRAWFDRVGSYFKENDLLQVLQDPKRIFNCDETGFFLCPKDKQVLVKKGSKRVYNRVANDEKECLTVLVNVSADGNVAPPMVLFPYKRVPPNIMSTVPSWWGLDPQNRAG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01030135; iTF_01076343; iTF_01020191; iTF_00889145;
- 90% Identity
- iTF_00889145;
- 80% Identity
- -