Lsal010906.1
Basic Information
- Insect
- Leucoma salicis
- Gene Symbol
- -
- Assembly
- GCA_948253155.1
- Location
- OX411829.1:3916197-3916997[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-08 7.1e-06 26.4 0.1 2 36 11 45 10 48 0.91
Sequence Information
- Coding Sequence
- ATGGACAGAAAGAAACGCAAGTGTTATACTAATGCGAAAGTGGCTGAAGCACTTTCATCAATTCGACAAGTTATGAGTATTTACAAAGCTTCGAGACAATATAATGTACCAGAGACTACGTTACGGAGTAAACGAGATGAGCTTTACGAGAATGAACATTGTGGTAAGCAACCAGTACTTAACCTAAAAGAAGAGAGACAAATCGTTGATTGGATCCATTACCTTGGTAAATGTGGCTTTCCAGTGACAAAAGATCAATTATTACACACTGTCTCTAAGTTAGTTGAAAACCTGCAGCGCCCTAATCCGTTTAAAGATGGAGTTCCAGGAAAAAAATGGTTTTTAAGTTGTATACAACGACATCTAGCAGTGTCAAAACGTGTGTCACAAAATCATCCAACAAGTAGAAACCAAGTCACGGAAGTTGCATTGCGAGCGTGGTTTGATCGAGTAGGATCATATTTTAAAGAAAACGATATGCTACAAGTTTTTCAAGATCCAAAATGTATATTCGACTGTGATGAAACTGGGTTTTTTCTTTGTCCAAAAGACAAGCAAGTTTTGGGTAGTAAACGAGTATATAATCGCGTTGCAAATGACGAAAAAGAATGCTTGACCGTATTAGTCAATGTGTCAGCAGATGGTAATGTAGCTCCGCCAATGGTACTATTCCCTTACAAGAGGCTACCTAACAATATCAAGTCAACGGTTCCTTCGTGGTGGGGACTTGGTAACACAGAATCGGGCTGGATGAATATGGAGTCATTTTACGAATATGTTGCAAATGTGTTTTACCCATGA
- Protein Sequence
- MDRKKRKCYTNAKVAEALSSIRQVMSIYKASRQYNVPETTLRSKRDELYENEHCGKQPVLNLKEERQIVDWIHYLGKCGFPVTKDQLLHTVSKLVENLQRPNPFKDGVPGKKWFLSCIQRHLAVSKRVSQNHPTSRNQVTEVALRAWFDRVGSYFKENDMLQVFQDPKCIFDCDETGFFLCPKDKQVLGSKRVYNRVANDEKECLTVLVNVSADGNVAPPMVLFPYKRLPNNIKSTVPSWWGLGNTESGWMNMESFYEYVANVFYP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01502909;
- 90% Identity
- iTF_01020191; iTF_01030135; iTF_01076343; iTF_01502909;
- 80% Identity
- -