Basic Information

Insect: Udea ferrugalis
Gene Symbol: rfx3
Assembly: GCA_950022985.1
Location: OX465521.1:2638047-2676165[-]

Transcription Factor Domain

TF Family: RFX
Domain: RFX domain
PFAM: PF02257
TF Group: Basic Domians group
Description: RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 3.6e-36 6.1e-32 110.9 0.0 3 77 223 297 221 299 0.97

2 5 4.6e-20 7.7e-16 59.3 0.6 39 77 342 380 334 382 0.92

3 5 4.6e-20 7.7e-16 59.3 0.6 39 77 425 463 417 465 0.92

4 5 4.6e-20 7.7e-16 59.3 0.6 39 77 508 546 500 548 0.92

5 5 1.1e-20 1.9e-16 61.3 0.8 39 78 591 630 583 631 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	3.6e-36	6.1e-32	110.9	0.0	3	77	223	297	221	299	0.97
2	5	4.6e-20	7.7e-16	59.3	0.6	39	77	342	380	334	382	0.92
3	5	4.6e-20	7.7e-16	59.3	0.6	39	77	425	463	417	465	0.92
4	5	4.6e-20	7.7e-16	59.3	0.6	39	77	508	546	500	548	0.92
5	5	1.1e-20	1.9e-16	61.3	0.8	39	78	591	630	583	631	0.93

Sequence Information

Coding Sequence: ATGTCTGAGATGGGGTTTGAGAACGTGTTTTACCTCGAGAACTTTGAGTGCAGCGACGAGGTGTTAGTTGAGTCGTCGCCGCCCGCCTCGCCTGACATGGCGGCGCGGCTCGCGGCCCCTGCGCAGGGAGCGAATGGTGGCGGAGGCGCGTCGCCAGGCGCCGTGCGCGAGCTCATCGTTATCCCAGAACTTCCCAACTCAATCCATCTGCAGCACGCTATGCAACAGGTGTCGAGCGCCGTGGTGGAGGTGAACGGAGACAGTTCCGGCCACTCCAGCCCCAGCACAGACGCCCAGCACACTTACATTACTGTTGCCATGGCCGGGGGCTGGCAGAATGGCGAACAGCTGTTGGTCAAGACCGAGGAGCACAGTGATCAAGAAAGTGAGGGCGGCAACGGAGTGAACTACCACGTGCAGTATGTGGAGCCTCAGGAGATCTACACTCAGGGCCACCAACCTCAAATGGAGACATTGCGTTCGTACCCCGTGTACGGCGTCACGACGGTCGCCAACGCGGCCGCGGACGCCGCAGCCACGGACAACGACTGGGCCGGCGGGGCCTCTGCCGAATATACGGCTTACGGCGTTGTGGTGGCGGGCGACGAGGCCGAGGCGCCGGCGTCCCCGGCCACGCCGGCCGTGGCGCAGCCGCGCATGCCGCCCGCCACCGTGCAGTGGCTGCTCGACCACTACGAGACCGCTGAAGGTGTATCCTTACCCCGTTCGACGCTATACACGCACTACATGCGTCACTGCTCGGCGCACCGCCTGGACCCGGTGAACGCGGCCTCCTTCGGCAAGCTCATCCGCTCCGTGTTCATCggcctgcgcacgcgccgcctcgGCACGCGCGGCAACTCCAAGTACCACTACTACGGGATCAGTGAACGCGGCCTCCTTCGGCAAGCTCATCCGCTCCGTGTTCATCggcctgcgcacgcgccgcctcgGCACGCGCGGCAACTCCAAGTACCACTACTACGGGATCAGGTCACTCTCTCTGTGTATCGATTAGTACGTGATCTAGTGAACGCGGCCTCCTTCGGCAAGCTCATCCGCTCCGTGTTCATCggcctgcgcacgcgccgcctcgGCACGCGCGGCAACTCCAAGTACCACTACTACGGGATCAGTGAACGCGGCCTCCTTCGGCAAGCTCATCCGCTCCGTGTTCATCggcctgcgcacgcgccgcctcgGCACGCGCGGCAACTCCAAGTACCACTACTACGGGATCAGGTCACTCTCTCTGTGTATCGATTAGTACGTGATCTAGTGAACGCGGCCTCCTTCGGCAAGCTCATCCGCTCCGTGTTCATCggcctgcgcacgcgccgcctcgGCACGCGCGGCAACTCCAAGTACCACTACTACGGGATCAGTGAACGCGGCCTCCTTCGGCAAGCTCATCCGCTCCGTGTTCATCggcctgcgcacgcgccgcctcgGCACGCGCGGCAACTCCAAGTACCACTACTACGGGATCAGGTCACTCTCTCTGTGTATCGATTAGTACGTGATCTAGTGAACGCGGCCTCCTTCGGCAAGCTCATCCGCTCCGTGTTCATCggcctgcgcacgcgccgcctcgGCACGCGCGGCAACTCCAAGTACCACTACTACGGGATCAGTGAACGCGGCCTCCTTCGGCAAGCTCATCCGCTCCGTGTTCATCggcctgcgcacgcgccgcctcgGCACGCGCGGCAACTCCAAGTACCACTACTACGGGATCAGGTCACTCTCTCTGTGTATCGATTAGTACGTGATCTAGTGAACGCGGCCTCCTTCGGCAAGCTCATCCGCTCCGTGTTCATCggcctgcgcacgcgccgcctcgGCACGCGCGGCAACTCCAAGTACCACTACTACGGGATCAGAGCCAAGTCTGGTGCTAACGGCGACGCGCAGCCTGTGCACGACTCTATGGATGACAAGACGGACTTAGATCATCAGGACAGAGAAGCTGAGACCGAGCGGGAACAAGCGACGAGTCCAGCGGGGCTGGCGGGGCTGGCGCACCGGCAGTACCTCGGGCCGGCGCCACAGCCCGACCCGCCCGAGCTCGAGCTGGCCGACCCGCCGCACATAGCGCCGCCTTCAGTGTTAGCCGCGCTCCGGGACCATCACAGGTATGAACCTGGGACCGAGCGGGAACAAGCGACGAGTCCAGCGGGGCTGGCGGGGCTGGCGCACCGGCAGTACCTCGGGCCGGCGCCACAGCCCGACCCGCCCGAGCTCGAGCTGGCCGACCCGCCGCACATAGCGCCGCCTTCAGTGTTAGCCGCGCTCCGGGACCATCACAGGTATGAACCTGGGACCGAGCGGGAACAAGCGACGAGTCCAGCGGGGCTGGCGGGGCTGGCGCACCGGCAGTACCTCGGGCCGGCGCCACAGCCCGACCCGCCCGAGCTCGAGCTGGCCGACCCGCCGCACATAGCGCCGCCTTCAGTGTTAGCCGCGCTCCGGGACCATCACAGGTATGAACCTGGGACCGAGCGGGAACAAGCGACGAGTCCAGCGGGGCTGGCGGGGCTGGCGCACCGGCAGTACCTCGGGCCGGCGCCACAGCCCGACCCGCCCGAGCTCGAGCTGGCCGACCCGCCGCACATAGCGCCGCCTTCAGTGTTAGCCGCGCTCCGGGACCATCACAGATCTCATGGCGTGGAGTTCCTAGAAGCTGTGGCGGCTCTAGACACGAATGCAGTGGAGCGTTCGCGACGTGCGTTCTGGCGACGCATGCCTGGTAGCCTTGAAAGTCTTCATGAAATCATACAGACCCTTTATGCTGATTTAGCCCGTATTATGGTTTGGAGCGGGGCTTTTGGCCTTATGGTCAACCCCAGTAAAACCCAAGTCATTGTATTTGGTAGCACGTGGCAAATAGCTAGAATAGACTGGGAGTCTTtgccacctattttgtttgacGGGATCCAAATCCCGTACAGTAGCACTGTCAAAAACCTGGGAATCTACCTAGACAACTCCTTGAGCTGGGAAAAACAGATTGGCGAGGTGGGGTCAGCGCGCCGCCTGTGTGCGCGGCGCGACGTGGCGGCGTGGCTGCTGGCCGCGGACCTGCGCCTGTACCAGCAGAGCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCCGCCGCAACTCACACAGGCCATCCGCAACTTCGCAAAAAGCCTAGAATCAGCCCTCGCAGCGGGAGCAGCGACCGCCCCGCCCCTCGCCGCCCGCGCCCACgcctccgccgccgccgccctcgccgccgccCTCCGCCGCTACACCTCGCTCAACCACCTGGCGCAGGCCGCCCGCGCCGTGCTCACTAACCAGCACCAGATACAACAGATGCTGGCGGATCTGAACCGCGTGGACTTCCGAGTGGTCCGCGAGCAAGCCGCCTGGGCCTGCTCCTGCGGCAGCGCTGCCACCGCGCTGCGTCTCGAGCAGGACTTCAAGGCGACCCTCGGTCGCGGCGCCACTCTAGAACAATGGGCATCCTGGCTGGAGGGCTGCGTGCGCACAGCACTAGCGGCGCACGAGCGGCGCGCGGACTACACGGCGCGCGCTCGGAGGCTACTGCTCGACTGGTCCTTCTACTCCTCGCTCGTCATACGGGAACTGACGCTCAGATCGGCGGCGTCGTTCGGCTCGTTCCACCTGTTGCGGCTGCTGTACGACGAGTACGTCTCGTACGTGATCGAGCGCCGCGTGGCCGCGCACCGCCGCAGCCCGCCCATCGCCGTCATGCATCGCCCCATGGTACACACTAACACTAGCTCGCTCCACCTGCTGCGGCTGCTGTACATAGAGTACGTCTCGTACGTGATCGAGCGCCGCGTGGCCGCGCACCGCCGCAGCCCGCCCATCGCCGTCATGCATCGCCCCATGGAGGATGACGAAGAGCTGCCCCCGGCCGAGCCGCCGCGTGAAGACCCGGAGGACGAAGACCCTGACCAGGAGTGGGACTGGGAGGACGAGGACGAGGACGACGACGAACCTGAACTCAAGAAGgcctcccccattgaccCGGAGGACGAAGACCCTGACCAGGAGTGGGACTGGGAGGACGAGGACGAGGACGACGACGAACCTGAACTCAAGAAGgcctcccccattgaccCGGAGGACGAAGACCCTGACCAGGAGTGGGACTGGGAGGACGAGGACGAGGACGACGACGAACCAGAGATCAAGAAGGTCAAGATGCCTAACGAGCAGTAG
Protein Sequence: MSEMGFENVFYLENFECSDEVLVESSPPASPDMAARLAAPAQGANGGGGASPGAVRELIVIPELPNSIHLQHAMQQVSSAVVEVNGDSSGHSSPSTDAQHTYITVAMAGGWQNGEQLLVKTEEHSDQESEGGNGVNYHVQYVEPQEIYTQGHQPQMETLRSYPVYGVTTVANAAADAAATDNDWAGGASAEYTAYGVVVAGDEAEAPASPATPAVAQPRMPPATVQWLLDHYETAEGVSLPRSTLYTHYMRHCSAHRLDPVNAASFGKLIRSVFIGLRTRRLGTRGNSKYHYYGISERGLLRQAHPLRVHRPAHAPPRHARQLQVPLLRDQVTLSVYRLVRDLVNAASFGKLIRSVFIGLRTRRLGTRGNSKYHYYGISERGLLRQAHPLRVHRPAHAPPRHARQLQVPLLRDQVTLSVYRLVRDLVNAASFGKLIRSVFIGLRTRRLGTRGNSKYHYYGISERGLLRQAHPLRVHRPAHAPPRHARQLQVPLLRDQVTLSVYRLVRDLVNAASFGKLIRSVFIGLRTRRLGTRGNSKYHYYGISERGLLRQAHPLRVHRPAHAPPRHARQLQVPLLRDQVTLSVYRLVRDLVNAASFGKLIRSVFIGLRTRRLGTRGNSKYHYYGIRAKSGANGDAQPVHDSMDDKTDLDHQDREAETEREQATSPAGLAGLAHRQYLGPAPQPDPPELELADPPHIAPPSVLAALRDHHRYEPGTEREQATSPAGLAGLAHRQYLGPAPQPDPPELELADPPHIAPPSVLAALRDHHRYEPGTEREQATSPAGLAGLAHRQYLGPAPQPDPPELELADPPHIAPPSVLAALRDHHRYEPGTEREQATSPAGLAGLAHRQYLGPAPQPDPPELELADPPHIAPPSVLAALRDHHRSHGVEFLEAVAALDTNAVERSRRAFWRRMPGSLESLHEIIQTLYADLARIMVWSGAFGLMVNPSKTQVIVFGSTWQIARIDWESLPPILFDGIQIPYSSTVKNLGIYLDNSLSWEKQIGEVGSARRLCARRDVAAWLLAADLRLYQQSVELLLPDVLRPIPPQLTQAIRNFAKSLESALAAGAATAPPLAARAHASAAAALAAALRRYTSLNHLAQAARAVLTNQHQIQQMLADLNRVDFRVVREQAAWACSCGSAATALRLEQDFKATLGRGATLEQWASWLEGCVRTALAAHERRADYTARARRLLLDWSFYSSLVIRELTLRSAASFGSFHLLRLLYDEYVSYVIERRVAAHRRSPPIAVMHRPMVHTNTSSLHLLRLLYIEYVSYVIERRVAAHRRSPPIAVMHRPMEDDEELPPAEPPREDPEDEDPDQEWDWEDEDEDDDEPELKKASPIDPEDEDPDQEWDWEDEDEDDDEPELKKASPIDPEDEDPDQEWDWEDEDEDDDEPEIKKVKMPNEQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -