Tjac008586.1
Basic Information
- Insect
- Tyria jacobaeae
- Gene Symbol
- -
- Assembly
- GCA_947561695.1
- Location
- OX387227.1:3583731-3587242[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3e-05 0.0024 18.7 2.3 1 23 297 319 297 319 0.97 2 11 1.1e-05 0.00086 20.1 1.9 1 23 390 413 390 413 0.98 3 11 0.00031 0.025 15.5 1.3 1 23 417 439 417 439 0.98 4 11 0.0053 0.43 11.6 0.5 2 23 461 483 460 483 0.92 5 11 0.017 1.4 10.0 3.9 1 23 487 510 487 510 0.97 6 11 0.033 2.6 9.2 0.3 2 23 533 555 532 555 0.90 7 11 9.5e-06 0.00076 20.3 2.9 1 23 565 587 565 588 0.96 8 11 0.02 1.6 9.8 1.6 2 23 604 625 603 625 0.96 9 11 0.0073 0.59 11.2 0.6 1 23 631 653 631 653 0.96 10 11 0.74 60 4.9 3.1 1 21 659 679 659 683 0.90 11 11 0.1 8.3 7.6 0.1 2 23 738 759 737 759 0.96
Sequence Information
- Coding Sequence
- ATGGCAGGTAAACAACTACACATAGAAAGCATGGACATCCCTGCGGAACCAATAAAGCAAGAAGTAGACCAAATCATCAGTGAGGAAGAAATGCACTATGAAATAAAATTTGAAACTCAAACTGATGAAACACCAGATGATGATAATCCTTTCGAAAATGTCCAATTAGAAGTGAAACAAGAAGAAATCTCTTTAACTATAGAGAGAGAAACTACTGACGCAGAAATTGATGACGTTCTTGAAACAATAAATGATGAATATAATCCCAAAGATGATCAGTATATTAGTATGCCGAAGTTTGAAGCAGGTTGTGATGAAAAGAGTGAAGTCAAAGAAGAAACGGTGCTGGGCGATTCTGTAGTCACATATGACTATCCCAGTTTTGAGAATGTCGATGATGGTGGTGAAAGAGAAAGCAGCATTGATAGCAACGATGCGACTGCTTTAACAAGAGTTGAAGCTTGTTTGCAGGATGAGATGGGCATAAAGAATGAAAGCGaaatttttgagGATAACCAAAAAGAAGATTACAAGATGAACATCAAAGAGGAATCTGACGTAACAGTAACAGAAACACATTTAATATCAAACAAACTAATTAACACTACATCTACAGTCACAAATACACATGACGGCCTAATCGAGTCACAAACTACTAAAACTCTTGTCATGGAAATACTACCCATGACACATACGGCAAACTTGCCATTCTCAAAAATGTCCAACCCTGAAGAAATATTACCAACATCTTACGATAATGATGATGTATATTTAGAATATCAAGACTCCTTTCAGTTAAATTCTATAACTGGTAACGTTTTATCCCTAGAACAGGAGGCATACGGTCTCCTGACAGCAAAAAGGAAAAAGAAAGATCCAGGGAAGCTGCATACCTGCCCAAAATGCTCTAAGTCCTACTCACAGAAGAGAGGTTTGAAAATGCACTTAGAAGTTCATGCATCTATTGAAAAGAGAGCACTTGGTTTTATCAAAGGACAGAGAACTAGAAAAGAGAATCGTAATATGAAGCTTAAAGAAGAAGCTCAGAAGCAAGACGAGAAGGGCAAAAAAGAAGGGTACGAATGCACTTGTGGCCAAGTATTTCAGAGGAGAAGTAGAATGGAAACGTGTCTTCGATCTCACAACATGTGTATAGATACGAACTCCTACCAATGCTCGACCTGTTCGAGACAGTTTAAAGATAAAGAAGAATTAACTGCGCATCGCAAAAGGCTTCACAGAAAGCGATTCCCTTGTAAATTCTGTCCAACGGATTATAATACTCGTAAGGAATTGTTCAAGCATTTGCAAATCCATCAGAAAGTGCAGCTTATGGAGTACAAAGTAATTTCTGAAGTTGTAAAGGGCAACCAGAAATTGAAATGTTTCATGTGTTCTAAAACATTCAAAGAGATGCCGGACTTGAAGTCCCATGTAATGGATGATCACAAAGAACCGTACAGTTGTCCGCGATGTAAAAGAACTTTCTCGAAAATTATCGACTTTGGCCATCATACTAAAACATTTCATCCAGAAGTCGAAGGACAATCTGTTTTAGACGTTCTCGAAGCGTTTTCTAAATTAGTTAAAGCTTGGAAATGTGAAGAATGTGGTCTTCAATTCCATGAAGCTGATAAACTGGCTATGCATCAGGTAGAAAAACATAGTCCTGACGCAAAATCTGAACCACAGTTCCAATGTACAGATTGTCGTAGAGTATTCATAAGTCAGAAGGGTCTTACATCTCACAGAAGAATCCATCATAGTACTGAAAGTGTAGAAGAATCAGAAGCGGTCGAAACTGGGGTTATGTGTTTGGAATGCCGCAAGATATGCAAAGACATGAACGCTTTACTGTCACATATGCGATTCCATTCGCCTGATAGGAAGTATCCTTGTAAATTCTGTGATTTTCGCTTCGCCACGCCTGAAAAGCGAAAAACTCACGCGGAAATCCATACAGGAGACATGAAATACGTTTGTTTTATATGTGAATATCAGTGCAGCTCTGAAAATAGATTAAAACAACACAAAACGTCTATAAAACATCTGAATATGAAAGAATTTTTATTGACTGGTAAACCTTTAATAGAAGAAGAACAGTCTACGTCCAAACAGGAGAAGATTAAAGACACGTTAAAGAAGAAGGAGTGGGTGCCTAAAAAGAAGAGAAAAAAGGAATCGACGGAGTCTTCTGAGTGTAGTGAAGTGTCCTGTGATATCTGCGGGGACAAGTTCCCCAACGAAAGTGTTATGTTAGAACATAAACAAACACACCCTTTTATTGAGTTTCCCAACGAGGATACACCAAGTAGGATATTTTTCAAGTAA
- Protein Sequence
- MAGKQLHIESMDIPAEPIKQEVDQIISEEEMHYEIKFETQTDETPDDDNPFENVQLEVKQEEISLTIERETTDAEIDDVLETINDEYNPKDDQYISMPKFEAGCDEKSEVKEETVLGDSVVTYDYPSFENVDDGGERESSIDSNDATALTRVEACLQDEMGIKNESEIFEDNQKEDYKMNIKEESDVTVTETHLISNKLINTTSTVTNTHDGLIESQTTKTLVMEILPMTHTANLPFSKMSNPEEILPTSYDNDDVYLEYQDSFQLNSITGNVLSLEQEAYGLLTAKRKKKDPGKLHTCPKCSKSYSQKRGLKMHLEVHASIEKRALGFIKGQRTRKENRNMKLKEEAQKQDEKGKKEGYECTCGQVFQRRSRMETCLRSHNMCIDTNSYQCSTCSRQFKDKEELTAHRKRLHRKRFPCKFCPTDYNTRKELFKHLQIHQKVQLMEYKVISEVVKGNQKLKCFMCSKTFKEMPDLKSHVMDDHKEPYSCPRCKRTFSKIIDFGHHTKTFHPEVEGQSVLDVLEAFSKLVKAWKCEECGLQFHEADKLAMHQVEKHSPDAKSEPQFQCTDCRRVFISQKGLTSHRRIHHSTESVEESEAVETGVMCLECRKICKDMNALLSHMRFHSPDRKYPCKFCDFRFATPEKRKTHAEIHTGDMKYVCFICEYQCSSENRLKQHKTSIKHLNMKEFLLTGKPLIEEEQSTSKQEKIKDTLKKKEWVPKKKRKKESTESSECSEVSCDICGDKFPNESVMLEHKQTHPFIEFPNEDTPSRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00824161; iTF_00636836; iTF_00677990; iTF_01152519; iTF_00869986; iTF_01333214; iTF_01436456; iTF_00441868; iTF_01198124; iTF_00823400; iTF_00157518; iTF_01492334; iTF_00281726; iTF_00282769; iTF_01167056; iTF_00638075; iTF_00405341; iTF_00909168; iTF_01361011; iTF_00707289; iTF_00795161;
- 90% Identity
- -
- 80% Identity
- -