Tabs027783.1
Basic Information
- Insect
- Tuta absoluta
- Gene Symbol
- nfxl1
- Assembly
- GCA_029230345.1
- Location
- CM055303.1:4104269-4106740[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2 3.9e+04 -7.8 5.6 15 19 134 138 133 138 0.81 2 19 0.13 2.4e+03 -0.3 0.4 4 10 169 175 168 175 0.95 3 19 5.8e-07 0.011 16.8 14.7 3 19 186 202 185 202 0.95 4 19 2 3.9e+04 -5.1 1.4 6 18 227 231 227 232 0.40 5 19 1.5e-07 0.003 18.6 14.1 1 19 237 255 237 255 0.93 6 19 0.76 1.5e+04 -2.8 2.2 6 10 280 284 279 284 0.83 7 19 3.2e-10 6.1e-06 27.2 14.7 1 19 290 308 290 308 0.99 8 19 1.6e-06 0.031 15.4 18.3 3 19 345 361 344 361 0.93 9 19 4.1e-06 0.08 14.1 18.6 1 18 395 412 395 413 0.97 10 19 3.6e-10 6.9e-06 27.0 12.1 1 19 422 440 422 440 0.99 11 19 0.004 77 4.5 5.8 9 19 488 498 486 498 0.89 12 19 0.017 3.4e+02 2.5 5.9 4 12 510 518 508 518 0.90 13 19 0.31 6e+03 -1.5 3.5 14 18 547 551 547 552 0.87 14 19 0.12 2.3e+03 -0.2 0.4 7 12 567 572 567 579 0.86 15 19 6e-06 0.12 13.5 6.1 1 11 588 598 588 599 0.98 16 19 0.00019 3.6 8.8 14.7 4 18 630 645 628 646 0.82 17 19 2 3.9e+04 -6.1 2.9 9 13 652 656 652 656 0.74 18 19 2.5e-05 0.48 11.6 13.2 1 16 687 701 687 706 0.92 19 19 1.4 2.8e+04 -3.7 0.9 5 10 735 740 735 740 0.90
Sequence Information
- Coding Sequence
- ATGTCGCGTAAATATCGCGATGCAGCCGAAAGACTGCAGCAGAACGTTCAGCGACACTTGCAGGAGATGAAAGAGTTGTCCTCGTCGGACGACGAAGATCCTTTCGAGTCCAACGTCCTCGAGAGTGTCTTCCGGAGCTACCGGACCGGCGGCGGAGACTCGCAGCTGCTGAATCGCACCAGGAACCTTCTAGAAGAAGCGATAAGCGGCCGCGCGGTCACCTGCCTCATTTGCATCGGTTCCGTCAAAAGAGCTGATGCGATATGGACTTGTGAACACTGCTATTGTTATTTCCATATATCTTGTATCCAAAAATGGGGTAACGACTGTGTCAGCATCAAACAAAACGAAATTCAGGCACCCATTAGTGTTTACAGAGCCAAGAAAGTTGAATGGTGCTGTCCAAAATGTCGCCAATCATATACCAAAAATCAGATACCAAGGAAATATAGATGTTATTGCGGCAAGACTGATGACCCACCTGTGCATCCTTGGTTGATACCTCATTCTTGTGGAGAGATATGTCAAAAGAGGATTTCAATTGGCGGTCATTGTATGCATCAATGCCTGCTGTTGTGCCACCCTGGGCCATGTCCACCATGTCCTCAGACAGTCAATGGAACATGCTATTGTTCAAAAGAGACTAAACTAGTAAGGTGTAGTTCAAATAAATGGTCATGCGGCAAACCCTGCCAAAAATTATTGCTCTGCAACTCTCATAAATGTGAAAATGAATGCCATGAAGGAGCTTGCCCACCCTGCACCTACTCCAGCTTGCAGCCATGTGAGTGTGGCACTGAGAAAGTAATGAGACTATGCAATGATGCCAAATGGCAGTGCCAAAAACCATGCAATAAACCTTTTGACTGTGGCTACCATAAATGTGAAAAAGTATGCCATTCTGGTAGCTGTGGCCCTTGCCCTAATACTGGCATGAGGTCATGTCCATGTGGAGCTAAAGAGAGATATGTAAAATGTCCTGATTTCTTAGAAACATGCCTGGGAACCTGTAATAAAAAGCAGGAATATTGTGAACACAGTTGTCCAGAAAAATGCCATAAAGGCCCATGCCCACCATGCCAAGTGGTGATCCAAAAGAAATGTTCCTGCAGAACACATGAAAGATCTATCCCTTGCAGCAGAGAGTTTAGATGTGAAACAAAATGTAGAGGAAGTAGGCTGTGTGGAAAACATCCATGTGCAAAGAAATGTTGCAACGGAAACTGCCCCCCTTGCGAAAAACTATGTGACAAACAGCTACAATGTGGTAGACACAAATGTACCGCAATATGCCATCTTGGACCTTGCTACCCATGCCCTAGAGAATCTAAAGTGACATGCCGATGCAAAGAAACTTATGTGACTGTGCCATGTGGCAGAGAAAAACATGTCAAACCACCTAAATGTAATCTACCTTgcaagataaaatataaatgtgGACATATTGATGAAAACAAACATCCATGCCATTTTGGAGAGTGTCCGTTGTGCAAAGCTATTTGTGAAAAACCATATCCAAGATGCGACCATTACTGCAAAGCAACTTGTCACAAGTTTGTACCTGTTGTTTTTAAACAGGTTGAGAAACCTGCTACACCATGGGACATACAGCCGCCTAAGACTAAAATCATGGCTCTTGATTGTCCACCCTGTGAAGCTCCGGTACCAGTTATTTGTTTTGGGGAACATGAAACAGAAGAGCAACCTTGTCACTCTGCAACTCGAAGACCTTGTGGCCGAGAGTGCGGTAAACCTTTAGCTTGTGGCAACCACTCCTGTACTCAACTCTGTCACCTATATCAACCTGATCCTAACTATCCAAACATACCTTTTCTTTGTAGACAATGTGATAAAGAATGTCAAGTACCCCGTCCAGCAAAATGTGCACACAAGTGTCCCAAACGTGCTTGTCATACAGGCGAATGTCCTCCGTGCGAAATTTTAGAACGCATTCTTTGCCATTGTGGATTGACAGAATTGTATCTTCGTTGCAAGGAGTTTTGCACAGCCTCTATAGATACATTATCTTGCAAACAGCAGTGTCCTAAGAATTTAGAATGCGGTCATCGTTGTAAAAATAACTGCCACCCTGGAGAATGTGGAAAGCAATTTTGCACAAAGAAAACAAAAGTGCATTGCCCATGTGGTAACTTGAAGAAGGAAGCTCCGTGTAATTTAGTAAAGAAGGGAGAAGCAAACATAACTTGCGACGAGAGCTGTGAGGCCAAAAAGCTTGCTATAAAATTAGAAAAGGAGAGggaaattcaaaaacaaaaacaattagaagAAGAAAAGAACAGGAGAGAGTTAGAAGAATATCAATGGAAATTGAGtggcaaaaaaaagaaatataaagaaaagaaaatgatTGTCCAAGAGGATAAGAGGAATTTTATTCAAAAGTATTGGATTGTTATTGTTTCAAGTTTGGTTGTAATTTTTGCTGGTGTTTATTTTGTATCTAATGTTTAA
- Protein Sequence
- MSRKYRDAAERLQQNVQRHLQEMKELSSSDDEDPFESNVLESVFRSYRTGGGDSQLLNRTRNLLEEAISGRAVTCLICIGSVKRADAIWTCEHCYCYFHISCIQKWGNDCVSIKQNEIQAPISVYRAKKVEWCCPKCRQSYTKNQIPRKYRCYCGKTDDPPVHPWLIPHSCGEICQKRISIGGHCMHQCLLLCHPGPCPPCPQTVNGTCYCSKETKLVRCSSNKWSCGKPCQKLLLCNSHKCENECHEGACPPCTYSSLQPCECGTEKVMRLCNDAKWQCQKPCNKPFDCGYHKCEKVCHSGSCGPCPNTGMRSCPCGAKERYVKCPDFLETCLGTCNKKQEYCEHSCPEKCHKGPCPPCQVVIQKKCSCRTHERSIPCSREFRCETKCRGSRLCGKHPCAKKCCNGNCPPCEKLCDKQLQCGRHKCTAICHLGPCYPCPRESKVTCRCKETYVTVPCGREKHVKPPKCNLPCKIKYKCGHIDENKHPCHFGECPLCKAICEKPYPRCDHYCKATCHKFVPVVFKQVEKPATPWDIQPPKTKIMALDCPPCEAPVPVICFGEHETEEQPCHSATRRPCGRECGKPLACGNHSCTQLCHLYQPDPNYPNIPFLCRQCDKECQVPRPAKCAHKCPKRACHTGECPPCEILERILCHCGLTELYLRCKEFCTASIDTLSCKQQCPKNLECGHRCKNNCHPGECGKQFCTKKTKVHCPCGNLKKEAPCNLVKKGEANITCDESCEAKKLAIKLEKEREIQKQKQLEEEKNRRELEEYQWKLSGKKKKYKEKKMIVQEDKRNFIQKYWIVIVSSLVVIFAGVYFVSNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00844998;
- 90% Identity
- iTF_00844998;
- 80% Identity
- -