Basic Information

Insect: Tuta absoluta
Gene Symbol: -
Assembly: GCA_029230345.1
Location: CM055283.1:3810065-3823230[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 5.1e-06 0.0005 21.4 4.0 1 23 199 221 199 221 0.98

2 28 0.0011 0.11 14.1 1.9 2 22 252 272 251 272 0.93

3 28 0.0015 0.14 13.7 0.8 3 23 314 335 312 335 0.95

4 28 1 98 4.8 3.7 2 23 386 408 385 408 0.94

5 28 0.0027 0.26 12.9 0.1 1 23 422 444 422 444 0.97

6 28 0.00012 0.011 17.2 0.8 1 21 484 504 484 505 0.95

7 28 0.0081 0.79 11.4 1.1 2 23 548 570 547 570 0.96

8 28 0.0074 0.72 11.5 1.0 1 23 620 643 620 643 0.97

9 28 0.0011 0.11 14.1 2.6 1 23 882 904 882 904 0.97

10 28 0.015 1.5 10.5 5.3 2 23 916 937 915 937 0.96

11 28 0.028 2.8 9.7 1.2 2 23 949 970 948 970 0.96

12 28 0.0027 0.27 12.8 0.3 1 23 980 1002 980 1002 0.98

13 28 0.0019 0.19 13.3 2.7 1 23 1029 1051 1029 1051 0.98

14 28 0.00053 0.051 15.1 1.7 1 23 1062 1084 1062 1084 0.97

15 28 3.1e-05 0.003 19.0 0.4 1 23 1092 1114 1092 1114 0.98

16 28 0.003 0.29 12.7 0.3 2 23 1134 1156 1133 1156 0.97

17 28 0.23 22 6.8 3.4 1 23 1174 1196 1174 1196 0.96

18 28 0.069 6.7 8.4 0.5 2 23 1237 1259 1236 1259 0.94

19 28 0.0048 0.47 12.1 0.3 1 23 1280 1302 1280 1302 0.97

20 28 7.1 6.9e+02 2.1 2.6 2 23 1345 1367 1344 1367 0.84

21 28 0.21 20 6.9 2.0 3 23 1384 1404 1382 1404 0.93

22 28 1.5 1.5e+02 4.2 2.5 5 23 1414 1432 1411 1432 0.93

23 28 0.016 1.5 10.5 0.6 2 23 1443 1465 1442 1465 0.95

24 28 2.8 2.7e+02 3.4 0.9 3 23 1483 1500 1481 1500 0.80

25 28 7 6.8e+02 2.1 1.3 2 20 1504 1522 1504 1524 0.87

26 28 0.43 42 5.9 1.5 2 23 1573 1594 1572 1594 0.93

27 28 0.0059 0.57 11.8 1.1 2 23 1605 1627 1604 1627 0.97

28 28 4.4 4.3e+02 2.8 4.4 2 20 1665 1683 1658 1685 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	5.1e-06	0.0005	21.4	4.0	1	23	199	221	199	221	0.98
2	28	0.0011	0.11	14.1	1.9	2	22	252	272	251	272	0.93
3	28	0.0015	0.14	13.7	0.8	3	23	314	335	312	335	0.95
4	28	1	98	4.8	3.7	2	23	386	408	385	408	0.94
5	28	0.0027	0.26	12.9	0.1	1	23	422	444	422	444	0.97
6	28	0.00012	0.011	17.2	0.8	1	21	484	504	484	505	0.95
7	28	0.0081	0.79	11.4	1.1	2	23	548	570	547	570	0.96
8	28	0.0074	0.72	11.5	1.0	1	23	620	643	620	643	0.97
9	28	0.0011	0.11	14.1	2.6	1	23	882	904	882	904	0.97
10	28	0.015	1.5	10.5	5.3	2	23	916	937	915	937	0.96
11	28	0.028	2.8	9.7	1.2	2	23	949	970	948	970	0.96
12	28	0.0027	0.27	12.8	0.3	1	23	980	1002	980	1002	0.98
13	28	0.0019	0.19	13.3	2.7	1	23	1029	1051	1029	1051	0.98
14	28	0.00053	0.051	15.1	1.7	1	23	1062	1084	1062	1084	0.97
15	28	3.1e-05	0.003	19.0	0.4	1	23	1092	1114	1092	1114	0.98
16	28	0.003	0.29	12.7	0.3	2	23	1134	1156	1133	1156	0.97
17	28	0.23	22	6.8	3.4	1	23	1174	1196	1174	1196	0.96
18	28	0.069	6.7	8.4	0.5	2	23	1237	1259	1236	1259	0.94
19	28	0.0048	0.47	12.1	0.3	1	23	1280	1302	1280	1302	0.97
20	28	7.1	6.9e+02	2.1	2.6	2	23	1345	1367	1344	1367	0.84
21	28	0.21	20	6.9	2.0	3	23	1384	1404	1382	1404	0.93
22	28	1.5	1.5e+02	4.2	2.5	5	23	1414	1432	1411	1432	0.93
23	28	0.016	1.5	10.5	0.6	2	23	1443	1465	1442	1465	0.95
24	28	2.8	2.7e+02	3.4	0.9	3	23	1483	1500	1481	1500	0.80
25	28	7	6.8e+02	2.1	1.3	2	20	1504	1522	1504	1524	0.87
26	28	0.43	42	5.9	1.5	2	23	1573	1594	1572	1594	0.93
27	28	0.0059	0.57	11.8	1.1	2	23	1605	1627	1604	1627	0.97
28	28	4.4	4.3e+02	2.8	4.4	2	20	1665	1683	1658	1685	0.88

Sequence Information

Coding Sequence: ATGGCCCTCAAGTTAGGAAAATGCAGGCTTTGCCTGAAGCTTGGGGACTTTTACTCCATCTTTACGATGGACAACGCTCTTCAGCTCTCCGAAATGGCTATGGACTGCGCTCGAATAAAGATCTACGAAGGCGACGGCCTCCCTGACAAGATCTGCTCGGAATGCGTCCAGAAACTCAGCAGCGCGTACATCTTCAAGCAGCAATGCGAGCGCTCCGACACCGAGCTACGGCGGAACTACGTGCCTCCACCAGGATTCAGCGTCACTCCACCCCCGCCAAACCGACAAAGCAGCGATTCGGCCTTTTCATCCGCTAATACAGACATGTCGTACCACAAACCCCCTTCCATCGAAAAAGTTACACCTGTCAATCGCCCGCGCAAAAGGAGCCGAGAGAGTATTGATGAATCCGTCAGCAGTCGGTCCCATGACTACAACCCTAGACCTAGCAACTCTAAACGGGTCGAAGAACTAAGGACCACGAACAAAAGACCCCGGAACCATTCCCCGAACGCCTCTCTCGATTCCGACTACGAAGACACAAGCTACTCCCACTACTCCCCCGGGACCGATTCAGATGAACCTCTTATCTCACACAAATGCAAGCAGTGTGGCAAAGAATTTAAATCATCAATGAGTCTTCGATCGCACATGAAGGTTCATAAACAGAAAACGAGCTTAGATACTGACGATGCAGTCGTAAATATACCCCGAAAAAGTTTGGAAGACGCAAAAGATTCGGAAGACAAATTGTCTTGCGAAAAATGCCACAAAACTTTTAAGCTGAAAATTATGCTGAAACGTCATCAAGAGACTTGCGGAGTTGCGGAGTCTTATCCGCAGCTGTCCAAAGAATTGATTATTTCTTTAGAACCTGTTGACGGGGTGATATCTCCGAAAAAAGCAGGAGATCCAAACAAGAAATCCGATAGAATTAACTGTGAAATGTGCAGTGCAAACTTCAAAACTTACGACAATATGGAGAAGCACATGAAGTACTCACACGCGGCTATTCCTAAAACACCGAGGCCAATTCCTCCCAAGGTCGAGATGATAAACTTCCCGTGTCTGTATTGCTGCGTTCCTTTTGATAACTACACTGCGATGGCTGAGCATTTCAACGACTGCTCCAAAAGGGACGACACGTTGCCTTTGAAATGCCCCGTTTGTCACAAGATCATGACGAAACGACACACGTTCCTGTCTCACGTGAAACAGATCCACTTCTTTGTGGTGGCTAAGCAGGAGTCTCCCACGAAGACATATGATTGCCGAATGTGCGACAAGAAGCTTGCGTCGCAAGACTTGCTTATTTCGCATTTGGCGTCACACATGTCTCACGTGGAAGAGCCTGCTGAGGTTCCAGATGACGACGATGGAAGCGTGGCCGACGACAATCAATCGATGCAGTCGGACTACACTGCCAGCTCTTCATTTTCTAATGGGCCCTACAAGTGTGATCTTTGTGACAAATCCTATAAATACAAGAAGGCATTAGAGACCCACCAGGCCAAATGCACTGGTGAAAGCCACGCCGCAGGTTTGGTGGAGGTCAAGACGGAACCGCCGGATAAACCTAGTCGAAGCTTTGTATATagAGACACGGACGAAGAAGACAGCCCGGCGGAAGGGGAAGATTTGACGTGTGACATTTGCGAGAAGCAGTTCTCGTACAAGCGTGTTTTGGATCAACACAAGCGCATCAAACACAACATGGGGTCCGGCCACAAGCGCGCTAAGATCACGCTCAAGGATTGCATGGTGCGCTGTCTCATATGCGACGTTGAGATGAAGGTGTCAACGATAAACGAGCACAATCAGAAGCACATAGCGGCTAACATCAAACCCCGCAACCAGTACACGTGTGGCGAATGCTCGGACAAGTTCAAGAGTTGCAGCGCCCTCGCCACACACATCAAGCTGGTCCACCGGCTCAAACAGCCGACCAGGCAGGAGAACGAACAATTCGAAGGTACGAGGTATCAACAATGGGAAGTAGTATATGTCGACAATTTGGAAGTCGGTATCAACAATTTGGAAGTAGATATCGGCAATTTGGAAGTAGATATCGGCAATTTGGAAGTAGATATCGGCAATTTGGAAGTAGATATCGACAATTTGGAAGTAGATATCGACAATTTGGAAGTAGATGTCGACAATTTGGAAGTAGATATCGACAATTTGGAAGTAGATATCGACAATTTGGAAGTAGATATCGTCAATTTTGAAGTATATATCGACAATTTAGAAGTAGATATCGGCAATTTGGAAGTAGATATCGACAATTTGGAAGTAGATATCGACAATTTGGAAGTAGATATCGACAATTTGGAAGTAGATATCGACAATTTGAAAGTAGATATCGACAATTTGGAAGTAGATATCGTCAATTCGGAAGTAGATATCGACAATTTGAAAGTAGATATCGACAATTTGGAAGTAGATATCGTCAATTTTGAAGTAGATATCGACAATTTGGAAGTAGATATCGACGATTTGGAAGTAGATGTCAATAATTGCGCAGACTTGGCGGATTTTTGTGAAGTCGTTGTGACGAAGACGGAACCCCTGGACGCGGTCCAGCGTCACAACGGCTGTGTAGAGGTTCCACTCGTCGACGGGCCACTGGTGGACATGGCCGGCTTCACCTGCCACATTTGCTCCAAGAAACTGAAGACCCTGATTTCATTGAAGAGGCACGTCAACTGGCATGCCAACGTCGGGAATAATATCACTAAGAACATCGAGTGCTTTGTTTGCAAAGAGACGTTCAAGTTCCAATGCCACTACAAGCTGCACATGCGCGCGCACTACACGGACCCGAACCTGGACCCGCAGCACCTCACCTGCCAGATCTGCGGCCGCCGCAGCAAGCACCTCCGAGCCGCGCAGGCGCACATGAACTTCCACAAACAAACCAGGTTCAAGAATAAAGACTATCAGTGCTCGATCTGTAAGCGAATCTTTCAGGACAGGAAGGTGTATCTAGCTCACATGGCGATACATTACAAGCGCGGGGAAGGACAGAACACGATCGTCGGAGATCGACCGCTCACGTCGGCCATGAAGAACTTGGAAGGTGGGTATCAATGTCCACAGTGCGGGAAGGTTTGTGATTCGGAAAACTCTCTCAAATGTCATATTCGATGGCATTCGTCGAAATCAGCTCTCTTCGGCTCCAGACACGAGTGTACAATTTGCGGTTTACAGTTCACAAATAAGAGGCGATTGGAGATCCACACGAGAGATCACTACGAAGACGAAAACGGACCGTACAAATGTACGATTTGCGGCAAAGGGTACATCGATGAAGATTACTTCCGCAGACACGTCAAGGGACACAACTTCGACCATTTCAGTCACAAGAAGCGAATCGAGAAGCTTCGCAAAGACAAAGTCAAGTGTCCGATCTGTTCCCGTTACTACCCGAATCTGATTAAGCTCATTCGCCATCTGAAGCGAAGCCATCCCGAAAGTAAAATGATAAAGGAGGACCCCGACGCCCCGCCGCCGCAGTACCACAGCTGCAAATTGTGCACCAGAGTATTCCTCACGGAACTAAAACTCAAACGCCACCAAAAAGCGCATACCCGAAAACATGAATTCTTCAAGTGCAAATTCTGTGGAATAAAGAGCGTGTCCCTCCGAAAGCACAAGCTTCACGTCAAGCAGAAGCACATGACAACTAAATTCTTCGACAATCCGTTGAAATGTCCGTACTGTACGGAGACTTACATAATCGGGTATAAATTACAACACCACGTGCGTGACGTACATGGTATCGATGAAAACTGGATCGCAGATCGCGAAGAGGAACCTATGGGACCCTTGAAAGAGTTCCAATGCTCCGTTTGTCTCAAGATCCTGGCCTCCAAAGGAAACTATGAGCGCCACATCGATTACCACAACTCCTTACGCTGCAACTACTGCTTCGACTACTTCAGCTCGACTAAATTCCTCGAGGGCCATCTAGCTTTCAGCTGCGACAAGAAAAAACTTATTGGGGAAACCGAAACATACCCGAAGAAGGTTAAATGCCACGTCTGCTATAAAGCTTTCGCCCTGCAAGTTAAAGTGGACTGTCACTTGCGAACGCAGCACGGCATCAAAGTGAATAGAGAATCGGGCGAAGACAAAGGAGAACATCTATGCGACTATTGCTTTAAAGTGTTCGAAAACGGCCACGCGCTCGCGATGCACAAGATCTACCACCGCACCATCGGCTACTACGGATGCATCTACTGCGACCGCAAATTCAACACTTACCAAAGATTCTTCCGACACAAGAAGGACCATTTGCTCCTTCTAAACAGGGAAGACCCGACCAAGTGCGAACATTGTGACGAGACTTTCGTGGCGTTCAGAGACATGATCGATCACATGAAGGAGGCCCACGGGGATGACAAGGACTGGGTTGTGCTGCCGAAGGAGGTCACTGAAGACTTCTGCACGATTTGCAACAAGGACTTCTACAACTTGCCAAGGCATATGTCCTACCACGAGGAGAATAGGTGCAAGAAATGCGGCGAGTACTTCCTATCGAGAACAGATTACGACAACCACCTCTGTGCCATTGAGAGTGAGGATGAAGTCAAGGAAGGAGACGAAAACGACATTCGGCCTAAATACGAAGAATGCACTTTCTGCTTCAAGCCTATTACCAAAACTGTTACAAAGATACGACACGATTTACTACACAACACTTCGGGAGCGATCTCCTGCCGATTCTGCACAATGAAATTCAAAACTTTGGACGCATTCAACATCCATTCGTTCTCGCACCGAAGCAGAAAGTATCACCAAAATCCGATCAAGTGCCGAATTTGCAAAGAGAAGTTCTTCAGATACGGACCTTTCGTCAAACACATGAAAACTGTTCACAAGTCAAAGAAGAAGATGCATTACCGAGCCATAGTGAAGGAGGAACGATGCGTCGTCTGCGGAGATAACTTCCCTAACCTCCACAACCACTACAGGTGCCATTTGAAGAACCAATGTCTCGAATGCAAAAAGTATTTCAATTCCGTGAAATTGTTCAAAGACCACCGATGCGACAAGGAAGATGCCGATCCGTCTAAAGTGTTCACGAGCGACGAAGATCTGTACGCGCTCATCAAATCTTACGTTCCCAAGGATGCGAAAGACGACGAAAAGTTCTACGGTTACACTGACGATgaggaagaggaagaagaaacaCAAAGTGTTCCCGAAACAAACAACGAGGACAGCCAGAGCTCCATGACAGATGTCATACAACAACCGTTCGTCATATCCGACGTACTGTCTCTATACGAGAAAAGGGAAGAACTGTTAGCGACATACATGAAAGAGGACCCGCAAAAGAAAGAGTTGAACCCCAAAAAGTACGTGGGGCCGAAAAGTAAAAGGCCAAAGAAGGAAAGCCCTAAAAAGACCAGTCCCAAAAAGGACAGTCCTAAAAAGGAAACGGCAAGTAATGAAGAAGGTTTGAAAAATGGAAATGGTGACGCTAaagatgatgacgatgacgacagCGACGTGGAAGTCGTCATCATGCTTGATGACGACTCTAACGGAGCTGAAAATACCAACAATATTATCAGTATTGACcttgacgatgacgatgattgA
Protein Sequence: MALKLGKCRLCLKLGDFYSIFTMDNALQLSEMAMDCARIKIYEGDGLPDKICSECVQKLSSAYIFKQQCERSDTELRRNYVPPPGFSVTPPPPNRQSSDSAFSSANTDMSYHKPPSIEKVTPVNRPRKRSRESIDESVSSRSHDYNPRPSNSKRVEELRTTNKRPRNHSPNASLDSDYEDTSYSHYSPGTDSDEPLISHKCKQCGKEFKSSMSLRSHMKVHKQKTSLDTDDAVVNIPRKSLEDAKDSEDKLSCEKCHKTFKLKIMLKRHQETCGVAESYPQLSKELIISLEPVDGVISPKKAGDPNKKSDRINCEMCSANFKTYDNMEKHMKYSHAAIPKTPRPIPPKVEMINFPCLYCCVPFDNYTAMAEHFNDCSKRDDTLPLKCPVCHKIMTKRHTFLSHVKQIHFFVVAKQESPTKTYDCRMCDKKLASQDLLISHLASHMSHVEEPAEVPDDDDGSVADDNQSMQSDYTASSSFSNGPYKCDLCDKSYKYKKALETHQAKCTGESHAAGLVEVKTEPPDKPSRSFVYRDTDEEDSPAEGEDLTCDICEKQFSYKRVLDQHKRIKHNMGSGHKRAKITLKDCMVRCLICDVEMKVSTINEHNQKHIAANIKPRNQYTCGECSDKFKSCSALATHIKLVHRLKQPTRQENEQFEGTRYQQWEVVYVDNLEVGINNLEVDIGNLEVDIGNLEVDIGNLEVDIDNLEVDIDNLEVDVDNLEVDIDNLEVDIDNLEVDIVNFEVYIDNLEVDIGNLEVDIDNLEVDIDNLEVDIDNLEVDIDNLKVDIDNLEVDIVNSEVDIDNLKVDIDNLEVDIVNFEVDIDNLEVDIDDLEVDVNNCADLADFCEVVVTKTEPLDAVQRHNGCVEVPLVDGPLVDMAGFTCHICSKKLKTLISLKRHVNWHANVGNNITKNIECFVCKETFKFQCHYKLHMRAHYTDPNLDPQHLTCQICGRRSKHLRAAQAHMNFHKQTRFKNKDYQCSICKRIFQDRKVYLAHMAIHYKRGEGQNTIVGDRPLTSAMKNLEGGYQCPQCGKVCDSENSLKCHIRWHSSKSALFGSRHECTICGLQFTNKRRLEIHTRDHYEDENGPYKCTICGKGYIDEDYFRRHVKGHNFDHFSHKKRIEKLRKDKVKCPICSRYYPNLIKLIRHLKRSHPESKMIKEDPDAPPPQYHSCKLCTRVFLTELKLKRHQKAHTRKHEFFKCKFCGIKSVSLRKHKLHVKQKHMTTKFFDNPLKCPYCTETYIIGYKLQHHVRDVHGIDENWIADREEEPMGPLKEFQCSVCLKILASKGNYERHIDYHNSLRCNYCFDYFSSTKFLEGHLAFSCDKKKLIGETETYPKKVKCHVCYKAFALQVKVDCHLRTQHGIKVNRESGEDKGEHLCDYCFKVFENGHALAMHKIYHRTIGYYGCIYCDRKFNTYQRFFRHKKDHLLLLNREDPTKCEHCDETFVAFRDMIDHMKEAHGDDKDWVVLPKEVTEDFCTICNKDFYNLPRHMSYHEENRCKKCGEYFLSRTDYDNHLCAIESEDEVKEGDENDIRPKYEECTFCFKPITKTVTKIRHDLLHNTSGAISCRFCTMKFKTLDAFNIHSFSHRSRKYHQNPIKCRICKEKFFRYGPFVKHMKTVHKSKKKMHYRAIVKEERCVVCGDNFPNLHNHYRCHLKNQCLECKKYFNSVKLFKDHRCDKEDADPSKVFTSDEDLYALIKSYVPKDAKDDEKFYGYTDDEEEEEETQSVPETNNEDSQSSMTDVIQQPFVISDVLSLYEKREELLATYMKEDPQKKELNPKKYVGPKSKRPKKESPKKTSPKKDSPKKETASNEEGLKNGNGDAKDDDDDDSDVEVVIMLDDDSNGAENTNNIISIDLDDDDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01337092;
90% Identity: -
80% Identity: -