Basic Information

Insect: Tuta absoluta
Gene Symbol: -
Assembly: GCA_029230345.1
Location: CM055285.1:11108960-11124558[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0006 0.058 14.9 0.1 2 23 190 212 189 212 0.96

2 12 0.0072 0.7 11.5 6.8 1 22 270 291 270 293 0.91

3 12 5 4.9e+02 2.6 0.6 5 23 302 320 300 320 0.93

4 12 0.0028 0.27 12.8 0.9 2 23 327 348 326 348 0.97

5 12 1.2e-05 0.0012 20.3 0.6 1 23 356 378 356 378 0.97

6 12 0.0075 0.73 11.5 4.8 1 23 387 410 387 410 0.97

7 12 0.00031 0.03 15.8 0.2 1 23 416 438 416 438 0.97

8 12 1.3e-07 1.3e-05 26.4 2.4 1 23 444 466 444 466 0.98

9 12 0.00069 0.067 14.7 0.7 1 23 471 493 471 493 0.98

10 12 4.1e-06 0.0004 21.7 4.2 1 23 499 521 499 521 0.97

11 12 5e-05 0.0049 18.3 0.6 2 23 528 550 527 550 0.95

12 12 1.6 1.6e+02 4.1 0.1 8 21 569 582 568 583 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0006	0.058	14.9	0.1	2	23	190	212	189	212	0.96
2	12	0.0072	0.7	11.5	6.8	1	22	270	291	270	293	0.91
3	12	5	4.9e+02	2.6	0.6	5	23	302	320	300	320	0.93
4	12	0.0028	0.27	12.8	0.9	2	23	327	348	326	348	0.97
5	12	1.2e-05	0.0012	20.3	0.6	1	23	356	378	356	378	0.97
6	12	0.0075	0.73	11.5	4.8	1	23	387	410	387	410	0.97
7	12	0.00031	0.03	15.8	0.2	1	23	416	438	416	438	0.97
8	12	1.3e-07	1.3e-05	26.4	2.4	1	23	444	466	444	466	0.98
9	12	0.00069	0.067	14.7	0.7	1	23	471	493	471	493	0.98
10	12	4.1e-06	0.0004	21.7	4.2	1	23	499	521	499	521	0.97
11	12	5e-05	0.0049	18.3	0.6	2	23	528	550	527	550	0.95
12	12	1.6	1.6e+02	4.1	0.1	8	21	569	582	568	583	0.88

Sequence Information

Coding Sequence: ATGGGTGAAATAGTAAAGGACTTGTGTAGATTGTGCGCCAAGCAACATGAAATTTCAAAGGATCTGTTGGACGCAAACAATAAGCATGTTTTAGATCTTATCCGGCAATTTACTCAAATAAGTGTTACAGAATGCGATAATATGCCTACAAAAGTATGTCTAGACTGTGAAGAAAGAATGGTATCATTCCAGCTCTTCATATTGGAGTGCTACAAAGTCCAGGATTCTCTGAGAAAACTGTGCCTAGACAACAATATCAAAACAGAAAATGCTCATATAGATTTGGGGGTAACAGTCATCAAATCAGAGGATGGTCATTTGCAGGTCAAAGATGAGTTATTAGCTGAAGAACTTCTAAATAATGCTTTACAAAACCATGCAATGAACGACTGCTATGATGGAGACAACTTCCAGGAGGCTTCAAGTGAGGAGGATGATCTTGACAACATCACCATAGCAGCACTTAAGCAATTTAAGACCAAAACTGCTCATAAAAAAGAGACTAATGAATCATCACATAAAATTAGCAAAAGAAGTAATTCCAGGATTAAGAACTTTATAAAgCTAGAATGCACAATTTGTGAAAAGGGATGTCCATCATGGCCAGAATTAAGAGTCCATTATCTTACAATACATCAAAGCAAGCCGGTTGCATACTGTTCTTGTGGGTTTGCAATACAGTCCAAGAGTGTTCTGTATAAACATGTTCAGGACCACAAATTAGACAGTAGAAGAATGAAAAGAGAGGTATCTGAAGGGTCTGATGCAGATTCACATTCAAGCTTCAAAGTTAGTGACTATATACGTTTCAAATGCGAAAACTGTGACAAGGAATGTTCAAGTTGGTACAGTTTGCGCGCACACTGCGACCGACACCACAACCAGCCGCCGCTCGTCACCTGCAAGTGCGGCGTCACGCTCAAGTCTAAGTCAGTCATGTACAAGCATGTGCAGGACCATAAGAACCCGAGTCATCTACGCTGTGATAAATGTTCCAAAATCCTGAAATCAACTGAAGCATTGGAGAAGCACCGGTTGAGACACGTGCCAAAGACGGACAGGAAGTTCAACTGCGAGGCTTGCGACAAAGTGTTCAATAACAAGGACTTACTCCGGTCGCACGAGCGGTCTCACATACCCATCGAGGAGAGGAAGGTGTTTACGTGTGATATCTGTCATTTGAAGTTCACGACTCGTTCGTCGTGCGCGTCGCACAGACGCGTGGTGCACGAGAAGGTGAAGGCGTACGTGTGCGACCTGTGCGGGTACGCGTGCGGCACCAACGGCGAGCTGCGCCAGCACCGCGCCATACACAGCGACGACAAGCCCTTCGTGTGCAACAAGTGCAACAAGCCATTCAAAACATACTCAAACCTAAAGACGCACATGGACACCCACGAGGACACGTCGTACGTGTGTTACGTGTGCAGTCGCGTGTTGAACAGTCGTCGAACGCTACGCAAACACCTGTTGGTCCACGAGGACAAGTGTCGCCATGTCTGCTCCTACTGCAACAAGGCGTTCAAGCGGCGGCAGACTCTCAAGGTGCACATGTACACGCACACCGGCGACAAGCCGCTCAGCTGCAAGTGGTGCGACGAGCGGTTCTCGTACGCGAGCACTCTGCGCTCGCACCGCCTCCGCGCGCACCCCGACAAGATGGCCGCGCAACACCTCACCAACACCTACAACCATGTCGCCCCCATCACCTTCACACACGTCAGCCAGCTGCAGCAACACCAGGAGAAAATAGCGCAGTCAGCGAAACGATCGAAAATTGCATTCACGGTGCCAATACTGGCATCGCAATATTTTATGCATTCGGTGTGTGGTATCGCCGCGTGGAGAGTGGAAGCAAAAGTGAAGCGAACCGGCATTGGCGCGATAAGGGTCGTCAGCCGTCAGCGTGCTGGCTCGTGGCCAAGCCCCGAGCCCCTAGCCCCTAGCCCGGCGCGCCACGCCGCCACAGTCGCCGGACATTCGTCTCCCCGCCCATTCTCCGCACTTAACAACTTATTACGCAACACAGCAACGGTCTCGGGTCTCGTTATCGCTTAG
Protein Sequence: MGEIVKDLCRLCAKQHEISKDLLDANNKHVLDLIRQFTQISVTECDNMPTKVCLDCEERMVSFQLFILECYKVQDSLRKLCLDNNIKTENAHIDLGVTVIKSEDGHLQVKDELLAEELLNNALQNHAMNDCYDGDNFQEASSEEDDLDNITIAALKQFKTKTAHKKETNESSHKISKRSNSRIKNFIKLECTICEKGCPSWPELRVHYLTIHQSKPVAYCSCGFAIQSKSVLYKHVQDHKLDSRRMKREVSEGSDADSHSSFKVSDYIRFKCENCDKECSSWYSLRAHCDRHHNQPPLVTCKCGVTLKSKSVMYKHVQDHKNPSHLRCDKCSKILKSTEALEKHRLRHVPKTDRKFNCEACDKVFNNKDLLRSHERSHIPIEERKVFTCDICHLKFTTRSSCASHRRVVHEKVKAYVCDLCGYACGTNGELRQHRAIHSDDKPFVCNKCNKPFKTYSNLKTHMDTHEDTSYVCYVCSRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGDKPLSCKWCDERFSYASTLRSHRLRAHPDKMAAQHLTNTYNHVAPITFTHVSQLQQHQEKIAQSAKRSKIAFTVPILASQYFMHSVCGIAAWRVEAKVKRTGIGAIRVVSRQRAGSWPSPEPLAPSPARHAATVAGHSSPRPFSALNNLLRNTATVSGLVIA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01337131;
90% Identity: iTF_00844650;
80% Identity: -