Klyc001368.1
Basic Information
- Insect
- Keiferia lycopersicella
- Gene Symbol
- -
- Assembly
- GCA_029255805.1
- Location
- JARACZ010000001.1:11473932-11481678[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00097 0.08 14.3 0.1 2 23 190 212 189 212 0.96 2 12 9.1 7.6e+02 1.8 0.1 6 23 222 239 221 239 0.91 3 12 0.011 0.88 11.0 6.9 1 22 268 289 268 291 0.91 4 12 4.9 4.1e+02 2.7 0.6 5 23 300 318 298 318 0.93 5 12 0.0027 0.23 12.9 0.9 2 23 325 346 324 346 0.97 6 12 1.8e-05 0.0015 19.8 0.6 1 23 354 376 354 376 0.97 7 12 0.013 1.1 10.8 4.7 1 23 385 408 385 408 0.97 8 12 0.0003 0.025 15.9 0.2 1 23 414 436 414 436 0.97 9 12 1.3e-07 1.1e-05 26.5 2.4 1 23 442 464 442 464 0.98 10 12 0.00067 0.056 14.8 0.7 1 23 469 491 469 491 0.98 11 12 4e-06 0.00034 21.8 4.2 1 23 497 519 497 519 0.97 12 12 4.9e-05 0.0041 18.4 0.6 2 23 526 548 525 548 0.95
Sequence Information
- Coding Sequence
- ATGGGTGAAATCATAAAGGACCTGTGTAGATTGTGCGCCAAGCAACATGAAATTTCGAAGGATCTGTTGGACGCAAACAATAAGCATGTTTTAGATCTTATCCGGCAATTTACTCAAATTAGTGTCACAGAATGCGACAACATGCCTACGAAAGTGTGTCTAGATTGTGAAGAAAGAATGGTATCGTTCCAGCTCTTCATATTAGAGTGTTACAAAGTCCAGGATACCCTGAGGAAACTGTGCCTGGATAACAATATCAAGACAGAAAATTCTCTTTTAGATTTAGAAGTAACAGTCATCAAATCTGAGGAGGGTCATTTGCAGgtCAAAGATGAGTTATTGGCAGAAGAACTTCTAAACAgTGCTTTACAAAACCATGAAATAGAAGACTGTTATGATGGAGACAACTTTCAGGAGGCTTCCAGCGAGGAAGATGATCTTGACAACATCACCATTGCATCTCTTAAACAACTCAAGAGCAAAACTGTTCATAAAAAAGATACCGACTACCCATCCCATAAAATTAGCAAAAGAACTAATTCCAGGATtaagaattttataaaaCTAGAATGCACAATATGTGAACAGGTGTGTCCGTCGTGGCCAGAATTACGAGTCCATTATCTCACACTACATCAAAGCAAGCCAGTTGCATACTGTTCTTGTGGGTTTGCAATACAGTCCAAGAGTGTTCTGTACAAACATATTCAAGAACACAAAGCCGAGAGTAGAAGAATGAAGAGAGAAGTATCTGAAGGGTCTGATGGGGACTCAAGCTTCAAAGTTAGTGATTTCGTGCGCTTCAAATGTGAGAACTGTGACAAGGAATGTTCGAGCTGGTACACGTTGCGGGCGCACTGCGACCGACACCACAAGGCGCCGCCGCTCGTCACCTGCAAGTGCGGCGTCACGCTCAAGTCTAAGTCAGTCATGTACAAACATGTGCAGGACCATAAGAATCCCAGTCATCTACGCTGTGATAAATGTTCCAAAATCCTGAAATCAACGGAAGCATTAGAGAAACACAGACTGAGACACGTGCCAAAGACGGACCGCAAGTTCAACTGCGAGGCTTGCGACAAAGTGTTCAACAACAAGGAGCTTCTGCGGTCGCATGAACGCTCCCACATACCCATTGAAGAGCGGAAGGTGTTTACGTGCGATGTCTGCCATTTAAAGTTCACGACTCGATCCTCTTGCGCGTCGCACAGACGAGTGGTGCACGAGAAAGTGAAAGCTTACGTGTGCGACTTGTGCGGATACGCGTGCGGAACCAACGGCGAGCTGCGGCAACACCGCGCCATACACAGCGACGACAAACCCTTCGTGTGCAACAAGTGTAACAAGCCGTTCAAAACGTACTCAAATCTGAAGACGCACATGGACACTCACGAAGACACATCATACGTATGTTACGTGTGTAGTCGCGTGTTGAACAGTCGTCGGACGCTTCGCAAACATCTGCTGGTTCACGAGGACAAGTGTCGCCATGTCTGCTCCTACTGCAACAAGGCGTTCAAGCGGCGGCAGACTCTCAAGGTCCACATGTACACACACACGGGCGACAAGCCGCTCAGCTGCAAGTGGTGCGACGAGCGGTTCTCGTACGCGAGCACTCTGCGCTCGCACCGCCTGCGCGCGCACCCCGACAAGATGGCCGCCCAGCACATGCCCAGCCAGTACAACAACGTCACACCCATCGCCTTCACGCACGTCACGCAGCTGCAGCAACAGCAGCCTGACAAGATGGCCGCCCAGCACATGCCCAGCCAGTACAACAACGTCACACCCATCGCCTTCACGCACGTCACGCAGCTGCAGCAACAGCAGCCTGACAAGATGGCCGCCCAGCACATGCCCAGCCAGTACAACAACGTCACACCCATCGCCTTCACGCACGTCACGCAGCTGCAGCAACAGGTACCAACAACTACACATACAGCAGCCTGA
- Protein Sequence
- MGEIIKDLCRLCAKQHEISKDLLDANNKHVLDLIRQFTQISVTECDNMPTKVCLDCEERMVSFQLFILECYKVQDTLRKLCLDNNIKTENSLLDLEVTVIKSEEGHLQVKDELLAEELLNSALQNHEIEDCYDGDNFQEASSEEDDLDNITIASLKQLKSKTVHKKDTDYPSHKISKRTNSRIKNFIKLECTICEQVCPSWPELRVHYLTLHQSKPVAYCSCGFAIQSKSVLYKHIQEHKAESRRMKREVSEGSDGDSSFKVSDFVRFKCENCDKECSSWYTLRAHCDRHHKAPPLVTCKCGVTLKSKSVMYKHVQDHKNPSHLRCDKCSKILKSTEALEKHRLRHVPKTDRKFNCEACDKVFNNKELLRSHERSHIPIEERKVFTCDVCHLKFTTRSSCASHRRVVHEKVKAYVCDLCGYACGTNGELRQHRAIHSDDKPFVCNKCNKPFKTYSNLKTHMDTHEDTSYVCYVCSRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGDKPLSCKWCDERFSYASTLRSHRLRAHPDKMAAQHMPSQYNNVTPIAFTHVTQLQQQQPDKMAAQHMPSQYNNVTPIAFTHVTQLQQQQPDKMAAQHMPSQYNNVTPIAFTHVTQLQQQVPTTTHTAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01337131;
- 90% Identity
- iTF_01501416;
- 80% Identity
- -