Tabs030378.1
Basic Information
- Insect
- Tuta absoluta
- Gene Symbol
- -
- Assembly
- GCA_029230345.1
- Location
- CM055306.1:2509096-2511736[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0045 0.44 12.2 5.9 1 23 170 193 170 193 0.96 2 18 3.7e-06 0.00036 21.9 0.5 1 23 202 225 202 225 0.97 3 18 0.018 1.7 10.3 1.1 2 23 239 261 239 261 0.97 4 18 0.00072 0.07 14.7 0.6 1 23 270 293 270 293 0.97 5 18 0.00011 0.011 17.2 2.2 2 23 306 328 305 329 0.96 6 18 0.0003 0.029 15.9 2.6 3 23 355 376 353 376 0.96 7 18 0.00015 0.015 16.8 1.9 2 23 386 408 385 408 0.96 8 18 0.33 32 6.3 1.2 3 19 414 430 413 433 0.92 9 18 0.0081 0.79 11.4 0.2 2 21 438 457 438 460 0.94 10 18 0.06 5.8 8.6 1.1 3 23 470 491 469 491 0.95 11 18 1.4e-05 0.0014 20.0 4.3 1 23 496 519 496 519 0.96 12 18 0.00018 0.017 16.6 0.9 1 23 530 553 530 553 0.96 13 18 0.0013 0.12 13.9 0.2 1 23 574 597 574 597 0.96 14 18 0.0091 0.89 11.2 0.1 2 23 604 626 603 626 0.95 15 18 0.019 1.9 10.2 2.9 2 23 631 652 630 652 0.97 16 18 7.2 7e+02 2.1 1.9 2 23 659 682 658 682 0.92 17 18 0.02 1.9 10.1 0.2 1 23 718 740 718 740 0.97 18 18 1.6 1.6e+02 4.1 3.2 1 23 746 769 746 769 0.96
Sequence Information
- Coding Sequence
- ATGACAGACTTAGATATAACAATCAAGTCTGAAATACCAGATGTAAATGACCGAAAAGATCCGACTTCATTCCTGCCGGAGGAGCCAATGTCTTACGAGATTAAAgtcaagaaaaagaagaagaaaaagaaaaagcaaGAAGATGATCCATTTAAAGATATACATGAGAATGTACTTGTCACAGAAAGAGTAATAATGCCTGATGCGGAGGAAGATATTTTAGATCCTGGTTTGGATCCAGAAGTTACAATCAAAGCTGAAAATATTGAAGTAGAGCTGGATTTCAATGATTTCACAAGTAATGATGATTATGTTCAACAAAATGAAGACAGCCAAGAACCCATAGTTAAATTAGAAACGGACAACAAAGAGGCTGTATTACTTACATTTGAAAGTATAGTCAATGATAAAGTCCTGGAAAAAATGGCTGAACAGACTGAACAAATTGCTAAACAGACTGAACAAATGGCTGAACAGGGAGTCAATACAACCACTGTTCCTGTTGGCCATATATGCAAAGTGTGCCATCTAAtctttaaaaatctaaaaacttTAAAGATGCACCAGAAAAGAAGACACAAAATATTCAGAAGAAATTGTAAACATGTGTGTGATGATTGCGGAATGGCATATGATCAAAAATCTAGCCTTGCCGCTCATATGAAAAGGAAACATGGCCCAGATGCtaataaatataatgataatataGAGAGGACCTGCGAAGAGTGTTCATTAGTTTTCAAAGGAACAAATAGGTTAAGGCTTCATATGCAGAGAAAACATGGGGCTTTTAAATCAGCATTCAAGCATGAATGTGAGGATTGTGGTATGGCATACGAAAATATAAGAAGTCTACTTGTCCATAGGAGGAGAAAACATTTTGGTTACAAAGCAGAAGTTTTGGATCAGTGGATTCAATGTCCATTCTGTCCGAAGATGTTTGATAAAAGGGAAACATATGCTAGACATATGCAAAGGAAGCATCATAGTAATGGTGAACCAAAAGTAGCACAGGACGTTgaagatttaaaaaatcatacaaaTGAAGCTGGAGAGATATTTTGCAaacaatgtccttgtgtattTTCATCTGTAACTTACTTAAAGGTTCACATGAGACggaaacataatattttacaaGAAGACTTCAAGCTAAAATGCCGTGTTTGCAATTTGTCTTACAATAGGAAAGAGAGTCTAAAAAGGCATGTGATGAGAAAACATGACTCGGGTGCATATTGTGATTCTTGCCGTAAACAATTTAATACCAGGGAAGATTACCTAAACCATTCTCATGTAAAGAGTGTCAATGAATGCAATATTTGTGGTCTAATTTTTGCCACTCTAGGGGGTTTAGGAAAGCATTTACGATGCATACACAAAATAGATCAACCAAAGGTTGCATTTTGTAATATATGCAATGAAGGATTTCATGACAAGCGTCTTTTAAAGCCCCATTTATTACGAGTACATTATAGGGTGTCTTACACTTGTAAGAATTGTgataaagtgtttaaaaataagGAGAGTTATCACAGACACATAACTGTTAAACACTCTGAAACAGCAATACCTAAGAAACCAATTCACAAATGTAATGAATGTCCCGAATCATTTGTTGATGAATTGGAACTTTGTAAACATGTGAATATAGTACATTCAGAGGTAGATAGGAAACCTGATATCCTAGATATTAAATTAGAAGATTTTGGGAATCCGTACCGTTGCACAAAGTGTCCAGAAACTTTCCCAGCCTGGGAACCGTTACGGTCCCATTACGCCAAAAATCACTACAAAGTAGTAAGTGTCATGTGTCAAAAATGCGGAGAAGAGGTGAAAGGCGAAGTCGAACTCCAGAAACATATAAAACAAGTTCACTCCGAAGATATAACGTGCAGATTTTGCGATTTCAAAACTAAGCAAAAAGTGACAATGACAAAACACATGTTGAGGCACAAAAATGCTACAACATTGCAATGCGATTACCTAAATTGTAAATACAAGACATTTTATACAAGCGCTATGGAAAAACATAAAAGTAAACATAACGAACAAGGTGTCAAATATCAGTGCACTCAATGTTCTTTTCAAACAATGAACAAATACATCTTGAGATATCACGAAGAAAATCATGCAACGGGCAAGAAACGCTACAACTGTGAAGAATGTGAATACGCAACTAATTTACCAGCCAACCTGATCCAGCATAAGTATAAACATGCCACGGAAAAGCGTTTCAAATGTGATCTGTGTTCGTTTGCCACGAAATACAATACATCTTTGCGATTTCATGTTAAAAAGAAACATTGTGATCTCCCTTCATAG
- Protein Sequence
- MTDLDITIKSEIPDVNDRKDPTSFLPEEPMSYEIKVKKKKKKKKKQEDDPFKDIHENVLVTERVIMPDAEEDILDPGLDPEVTIKAENIEVELDFNDFTSNDDYVQQNEDSQEPIVKLETDNKEAVLLTFESIVNDKVLEKMAEQTEQIAKQTEQMAEQGVNTTTVPVGHICKVCHLIFKNLKTLKMHQKRRHKIFRRNCKHVCDDCGMAYDQKSSLAAHMKRKHGPDANKYNDNIERTCEECSLVFKGTNRLRLHMQRKHGAFKSAFKHECEDCGMAYENIRSLLVHRRRKHFGYKAEVLDQWIQCPFCPKMFDKRETYARHMQRKHHSNGEPKVAQDVEDLKNHTNEAGEIFCKQCPCVFSSVTYLKVHMRRKHNILQEDFKLKCRVCNLSYNRKESLKRHVMRKHDSGAYCDSCRKQFNTREDYLNHSHVKSVNECNICGLIFATLGGLGKHLRCIHKIDQPKVAFCNICNEGFHDKRLLKPHLLRVHYRVSYTCKNCDKVFKNKESYHRHITVKHSETAIPKKPIHKCNECPESFVDELELCKHVNIVHSEVDRKPDILDIKLEDFGNPYRCTKCPETFPAWEPLRSHYAKNHYKVVSVMCQKCGEEVKGEVELQKHIKQVHSEDITCRFCDFKTKQKVTMTKHMLRHKNATTLQCDYLNCKYKTFYTSAMEKHKSKHNEQGVKYQCTQCSFQTMNKYILRYHEENHATGKKRYNCEECEYATNLPANLIQHKYKHATEKRFKCDLCSFATKYNTSLRFHVKKKHCDLPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00844642;
- 90% Identity
- -
- 80% Identity
- -