Klyc006993.1
Basic Information
- Insect
- Keiferia lycopersicella
- Gene Symbol
- -
- Assembly
- GCA_029255805.1
- Location
- JARACZ010000004.1:20245475-20248303[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0015 0.13 13.7 3.9 2 23 167 189 167 189 0.96 2 18 0.00017 0.014 16.7 0.2 1 23 198 221 198 221 0.97 3 18 0.0046 0.38 12.2 2.7 1 23 234 257 234 257 0.97 4 18 0.00023 0.019 16.3 1.1 1 23 266 289 266 289 0.97 5 18 0.00012 0.0098 17.2 2.2 2 23 302 324 301 325 0.96 6 18 0.00064 0.053 14.9 3.2 3 23 351 372 350 372 0.97 7 18 4e-05 0.0033 18.7 1.8 2 23 382 404 381 404 0.96 8 18 0.11 8.8 7.9 1.0 2 19 409 426 408 429 0.92 9 18 0.0023 0.19 13.1 0.2 2 21 434 453 434 456 0.95 10 18 0.062 5.2 8.6 1.1 3 23 466 487 465 487 0.95 11 18 3.9e-06 0.00032 21.9 3.8 1 23 492 515 492 515 0.96 12 18 0.022 1.9 10.0 0.3 2 23 527 549 526 549 0.95 13 18 0.0042 0.35 12.3 0.5 1 23 578 601 578 601 0.96 14 18 0.0025 0.21 13.0 0.1 2 23 608 630 607 630 0.96 15 18 0.023 1.9 10.0 3.3 2 23 635 656 634 656 0.96 16 18 2.7 2.2e+02 3.5 2.0 1 23 693 715 693 715 0.93 17 18 0.067 5.6 8.5 0.2 1 23 722 744 722 744 0.97 18 18 0.88 73 5.0 2.3 1 23 750 773 750 773 0.96
Sequence Information
- Coding Sequence
- ATGGACACCTTGGCAAACTTAGATATAACAATTAAATCTGAAATACCAGACATATCTAAGCGTCAGGATCCCACTTCTTTCCTGCCCGAAGAGCCCATGTCTTACGAGATCAAAgtcaagaaaaagaagaaaaaaaagaaaaagcaaGAAGATGACCCGTTTAAAGATATTCAAGAGAATGTGCTTGTTACGAAAAGAGTCATCATGCCTGATGAAGAAGAGGATGTATTGGAACCTGGTTTAGAACCCGAAGTAAACATCAAAGTTGAAAATATTGATGTGGAACTGGATTTCAATGATTTCACAAGTAATGATGATTTTATTCAACAAACTGAGGAAAGTCAAGAACCTGAAGTGAAATTAGAAATGGACAACAAAGAGGCTGTTTTACTCACATTTGAAAGTATTGTTAATGGTAAAGTGATAGAAAATATTGTGGAACAGGCAGAAAAAATGAATGAGCCGACAGTTGAGACATCCAATTTGTCTGTTGGCCGTGTATGCAAAGTGTGCCACCTTATCTTCAAAAatctgaaatctttaaaaatgcatcagaaaagaagacacaaaatattTAGAAGGAATTGTAAACATGTCTGTGATGAGTGTGGGATGGCATATGATATGAAAGCCAGCCTAGTCGCTCATATGAAACGCAAACATGGCCCTGATGCTAATAAATACAACGATAATATTGAGCACACCTGTGAAGAATGTTCACTAGTTTTCAAAGGAACAAATAGATTAAGGCTTCATATGAGAAGAAAACATGGGGCCTTCAAATCAGCATTCATACACGAATGTGAGGATTGTGGTATGGTATACGAAAACTTTAGAAGTCTAATTGTTCATAGGAGGAGAAAACATTTTGGTTACAAACCAGAAGTTTTAGATCAGTGGATTCAGTGTCCATTCTGTCCGAAGATGTTTGATAAAAGGGAGACTTATGCAAGACATATGCAAAGAAAGCATCACGAAAATGGTGAACCAAAAGTACCTAAAGACCTTGAAGATGTAAAAAATCGTACTAATGAAGCTGGAGAGGTATTTTGCAAACAATGCCCTTGCGTATTTTCGTCTATAACTTACTTAAAAGTTCATATGAGGCGAAAACATAATTATTTACTTGAGGACTTCCAGCTTAAATGCCGTATTTGCAATTTGTCTTACAACAGAAAGGAAAGTTTAAAAAGGCATATTTTGAGAAAACATAACACTGGTTCATATTGTGATCTTTGCCGCAAACAATTTAATACGAGGGAAGAATACCTGAATCATTCCCATGTGAAAAGTGTCAATGAATGTAATATTTGCGGCTTAATTTTCGCCACGTTAGGTGGTTTGGGAAAGCATATGCGTTGCATTCACAAAATAGACCAACCTAAAGTTGCATTTTGTAATATATGCAACGAAGGATTTCATGACAAACGTCTGTTAAAACCTCATTTATTAAGAGTACATTACAGAGTGTCTTACACTTGCAAGGATTGTGACAAAGTGTTTAAAAATAAGGAGAGTTATCACAGACATATAACAGTAAAACATTCAGACACGGCAATACCTAATAAACCAATCCTCAACTGCAATAAATGCCCAGAATTGTTTGTTGACGAATTAGAACTTTGCAAACATGTAAATGTGGTACATTCAGAGGCAGTAGTAGAAGATAGAGGAGTAGATAGGAAACCTGACATTCTTAACATCAAAATGGAAATAGAAGATGTTCATCCGTACCGTTGCACGAAGTGTACTGAAACTTTTCCAGCATGGGAACCTTTACGGTTACATTATTCGAAGAATCACTACAAAGTTATAAGTGTCATGTGTCAAAAATGCGGAGAAGAAGTGAAAGGTGAAGCGGAGCTCCGAAAGCATATTAAAAAAGTGCACTCTGAAGAGTTAACCTGCAGATTTTGCGATTTCAAGACTAAACAAAAAGTCACTATGACTAAACACATGCTGAGGCACAAAAATGCCAAAACCCTGCAATGTGATTACCTCAACTGCAGATACAAGACATTTTACACAAACGCTATGGAAAAACATAAAAGAAAGCATACCGAAATAGGTGCGACATACCAGTGCTCTCAGTGTTCTTTTCAAACTATGAACAAGTATGTTTTAAAATATCATGAAGATAATCATTCAACCGGCAAGAAACGCTACAATTGTGGAGAATGTGAATATGCTACAAATCTAGCAGCGAATCTGATTCAGCATAAATATAAGCATGCTACtgaaaaacgtttcaaatgTGACTTGTGTTCGTTTGCCACAAAATACAATGCGTCTTTGAGGTTTCATGTTAAAAAGAAACATTGTGATCTCCCaacataa
- Protein Sequence
- MDTLANLDITIKSEIPDISKRQDPTSFLPEEPMSYEIKVKKKKKKKKKQEDDPFKDIQENVLVTKRVIMPDEEEDVLEPGLEPEVNIKVENIDVELDFNDFTSNDDFIQQTEESQEPEVKLEMDNKEAVLLTFESIVNGKVIENIVEQAEKMNEPTVETSNLSVGRVCKVCHLIFKNLKSLKMHQKRRHKIFRRNCKHVCDECGMAYDMKASLVAHMKRKHGPDANKYNDNIEHTCEECSLVFKGTNRLRLHMRRKHGAFKSAFIHECEDCGMVYENFRSLIVHRRRKHFGYKPEVLDQWIQCPFCPKMFDKRETYARHMQRKHHENGEPKVPKDLEDVKNRTNEAGEVFCKQCPCVFSSITYLKVHMRRKHNYLLEDFQLKCRICNLSYNRKESLKRHILRKHNTGSYCDLCRKQFNTREEYLNHSHVKSVNECNICGLIFATLGGLGKHMRCIHKIDQPKVAFCNICNEGFHDKRLLKPHLLRVHYRVSYTCKDCDKVFKNKESYHRHITVKHSDTAIPNKPILNCNKCPELFVDELELCKHVNVVHSEAVVEDRGVDRKPDILNIKMEIEDVHPYRCTKCTETFPAWEPLRLHYSKNHYKVISVMCQKCGEEVKGEAELRKHIKKVHSEELTCRFCDFKTKQKVTMTKHMLRHKNAKTLQCDYLNCRYKTFYTNAMEKHKRKHTEIGATYQCSQCSFQTMNKYVLKYHEDNHSTGKKRYNCGECEYATNLAANLIQHKYKHATEKRFKCDLCSFATKYNASLRFHVKKKHCDLPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01501407;
- 90% Identity
- -
- 80% Identity
- -