Basic Information

Insect: Tuta absoluta
Gene Symbol: -
Assembly: GCA_029230345.1
Location: CM055310.1:4423584-4425476[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00029 0.028 15.9 0.7 1 23 50 72 50 72 0.94

2 16 0.15 15 7.3 0.0 2 23 100 122 99 122 0.89

3 16 0.17 17 7.2 4.1 2 23 143 165 142 165 0.95

4 16 3.5e-05 0.0034 18.8 0.5 1 23 170 193 170 193 0.97

5 16 3.8e-05 0.0037 18.7 1.7 1 23 198 221 198 221 0.98

6 16 0.00012 0.012 17.1 2.7 2 23 224 246 224 246 0.95

7 16 1.5 1.4e+02 4.3 0.9 2 20 256 274 256 276 0.94

8 16 0.00065 0.064 14.8 0.3 1 23 331 354 331 354 0.96

9 16 0.062 6.1 8.6 0.3 2 23 382 404 381 404 0.94

10 16 0.078 7.6 8.3 0.2 2 23 427 449 426 449 0.95

11 16 2.2e-05 0.0022 19.4 0.7 3 23 456 477 455 477 0.95

12 16 0.0074 0.72 11.5 1.7 2 23 482 504 481 504 0.94

13 16 0.00023 0.023 16.2 1.7 1 23 509 532 509 532 0.97

14 16 0.00068 0.067 14.7 7.8 1 23 536 559 536 559 0.97

15 16 0.00019 0.018 16.5 0.4 2 23 566 587 565 587 0.96

16 16 4.5e-05 0.0044 18.5 0.6 1 23 593 615 593 615 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00029	0.028	15.9	0.7	1	23	50	72	50	72	0.94
2	16	0.15	15	7.3	0.0	2	23	100	122	99	122	0.89
3	16	0.17	17	7.2	4.1	2	23	143	165	142	165	0.95
4	16	3.5e-05	0.0034	18.8	0.5	1	23	170	193	170	193	0.97
5	16	3.8e-05	0.0037	18.7	1.7	1	23	198	221	198	221	0.98
6	16	0.00012	0.012	17.1	2.7	2	23	224	246	224	246	0.95
7	16	1.5	1.4e+02	4.3	0.9	2	20	256	274	256	276	0.94
8	16	0.00065	0.064	14.8	0.3	1	23	331	354	331	354	0.96
9	16	0.062	6.1	8.6	0.3	2	23	382	404	381	404	0.94
10	16	0.078	7.6	8.3	0.2	2	23	427	449	426	449	0.95
11	16	2.2e-05	0.0022	19.4	0.7	3	23	456	477	455	477	0.95
12	16	0.0074	0.72	11.5	1.7	2	23	482	504	481	504	0.94
13	16	0.00023	0.023	16.2	1.7	1	23	509	532	509	532	0.97
14	16	0.00068	0.067	14.7	7.8	1	23	536	559	536	559	0.97
15	16	0.00019	0.018	16.5	0.4	2	23	566	587	565	587	0.96
16	16	4.5e-05	0.0044	18.5	0.6	1	23	593	615	593	615	0.96

Sequence Information

Coding Sequence: ATGCTAAGATTGAGAACTACAGGCCGGCCTTTGTTTTCAGATGAGCCGTCAGGCCCATACGCCAGAAGCACCACTGAGCGACGCCGGAAAAACCTCGAGATACTTTTCAACAACACATCCATACTCCCCTTCAAATGGAAGGGGAAACATATATGTTTCTATTGCGGGGAAACATTCGCTGAATACGCGCAACTTAAAAAACATACGATCGCTCACGGCCCGTGCACGACTAAAGATTACTCGCTCAAAATCATTAAAGGCAACCATATTGAAGTTAAAATCGATGTATCAGATATAAGTTGCAATATTTGCAACGAACCTTTTCCTAAGTTTGATGAAATCGTTGATCATCTAATCGGGAAACACCAGTTGGAATATGACAAATCTATTGATACTGAAATCGTAGAGTACAGACTGGCCGATTGCCGCTGTCTTTACTGTGACCAGGAGTTTAGTTACTTCGGTAGACTGGTCTCTCATGTCAATATGTGTCACCCGCAAAACAGCTTCATTTGTAATGAATGCGGCGGTACATTTAACAAGAAAAGAGATTTGAGCGAACACATAAGGAGTAACCACAAGGAGGGCGGTTACACCTGCAAGCAATGCTCAGAGGTGTTTGaaacaaaaaatcttttgtTGAAACACCAAAACAGTTATCATTTCCGCCGATGCAAGCATTGTAGTGAATCGTTCTCTTCAAAGTTGCTCTTGCAGAAACACATGGAGCTTGAGCATCCGAACGAACTGTCAGACGACAGTCGTCAATGTAAATATTGCATGAAAGAAGTCCACACGAAACAAGGCCTGAGACAGCATTTAGGCAAATGTAAGGTCAGAATGTTGGCGGAGTCTTTAAAACCCCCGGAGAATGACACTGATAATGTGAACCTCGGACCAAGGAGACGTCAAAACGTTGCTCTAATACGGCACAATATCGTCAGCGTTCTTAATACGTCCACAGCCATACCGTTCCGGTATTTCACTTCATACGTCTGTTTCTATTGTACGATGAAGTTCGTCGATTTTGAAGAGCTCAGAGCTCACACTCTCATTGAACACCCTGTCTGCGATTTGAAATCGAAATGCGTTAAAAAGATAAAAGGCGAACGAACAACCGTCAAAATAGATATATCCGCGCTATCTTGTAAAGTTTGTTCTCAATCTGTGCACAGTTTAGAAGATCTTATAGATCACATAACAAGCGAGCATAACATCAAATATGACAGGAATGTGTCCGGTTGTTTCGAACCGTTCAAAATCGTCAAAGAAAACATACCTTGTTTGAAATGTCCTCTAACGTTCCGCTATTTTGGGATCCTCCTTCGGCATATAAACTCTACGCATTCCGGCAACAAAGGCATTTGCGATTTCTGCGGCCGTAGTTTCAAGAACGTCGCCAATTTGAAAGTACATATAAACCACGCGCACACAGACTCCATAGAATGCGACGTTTGTTCCGCAAAATTCCGCAACCAGTGGTGCCTCTCTCGGCATAAGGCTAAAAACCATGACGCAAAAGACTTCAAATGCCCCAAATGTCCTGAGAAATTCCAATCGCAGTACCAAAAACAAAAGCATTTGATCAAAATTCACGGTGAAGGTCACAAGTGCATGTATTGTCACCGAATGTTCACTAGAAACTCCTTCATGAAGGACCACATTAGGCGTACACATCTCAAAGAGAAAAACGTACCGTGTACTTTGTGTAACGAAAAGTTCTTCGACAACTACCTATTGAAAATGCATATGGCGAAACACTCTGGCGATCGTAAGTATGTTTGTGGTATTTGCGGCAAGACTTTCTTGAGGAAAAGTAACTTGTATTCTCATAACGAAATGCACAAAAAGTACGGCCATGTTCAAAATGAAAGCAATATTAATAGCGAGTAA
Protein Sequence: MLRLRTTGRPLFSDEPSGPYARSTTERRRKNLEILFNNTSILPFKWKGKHICFYCGETFAEYAQLKKHTIAHGPCTTKDYSLKIIKGNHIEVKIDVSDISCNICNEPFPKFDEIVDHLIGKHQLEYDKSIDTEIVEYRLADCRCLYCDQEFSYFGRLVSHVNMCHPQNSFICNECGGTFNKKRDLSEHIRSNHKEGGYTCKQCSEVFETKNLLLKHQNSYHFRRCKHCSESFSSKLLLQKHMELEHPNELSDDSRQCKYCMKEVHTKQGLRQHLGKCKVRMLAESLKPPENDTDNVNLGPRRRQNVALIRHNIVSVLNTSTAIPFRYFTSYVCFYCTMKFVDFEELRAHTLIEHPVCDLKSKCVKKIKGERTTVKIDISALSCKVCSQSVHSLEDLIDHITSEHNIKYDRNVSGCFEPFKIVKENIPCLKCPLTFRYFGILLRHINSTHSGNKGICDFCGRSFKNVANLKVHINHAHTDSIECDVCSAKFRNQWCLSRHKAKNHDAKDFKCPKCPEKFQSQYQKQKHLIKIHGEGHKCMYCHRMFTRNSFMKDHIRRTHLKEKNVPCTLCNEKFFDNYLLKMHMAKHSGDRKYVCGICGKTFLRKSNLYSHNEMHKKYGHVQNESNINSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00844631;
90% Identity: iTF_00844631;
80% Identity: -