Klyc026450.1
Basic Information
- Insect
- Keiferia lycopersicella
- Gene Symbol
- -
- Assembly
- GCA_029255805.1
- Location
- JARACZ010000030.1:2755047-2756939[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0003 0.025 15.9 0.7 1 23 50 72 50 72 0.94 2 16 0.15 12 7.5 0.0 2 23 100 122 99 122 0.89 3 16 0.12 10 7.7 3.5 2 23 143 165 142 165 0.95 4 16 3.6e-05 0.003 18.8 0.5 1 23 170 193 170 193 0.97 5 16 5.7e-05 0.0048 18.2 1.6 1 23 198 221 198 221 0.97 6 16 5.9e-05 0.0049 18.1 2.4 2 23 224 246 224 246 0.96 7 16 1.5 1.3e+02 4.3 0.9 2 20 256 274 256 276 0.94 8 16 0.00055 0.045 15.1 0.4 1 23 331 354 331 354 0.97 9 16 6.2 5.1e+02 2.3 0.3 1 15 381 395 381 404 0.69 10 16 0.081 6.7 8.3 0.2 2 23 427 449 426 449 0.95 11 16 2.3e-05 0.0019 19.4 0.7 3 23 456 477 455 477 0.95 12 16 0.0077 0.64 11.5 1.7 2 23 482 504 481 504 0.94 13 16 0.00024 0.02 16.2 1.7 1 23 509 532 509 532 0.97 14 16 0.00071 0.059 14.7 7.8 1 23 536 559 536 559 0.97 15 16 0.0002 0.016 16.5 0.4 2 23 566 587 565 587 0.96 16 16 4.7e-05 0.0039 18.5 0.6 1 23 593 615 593 615 0.96
Sequence Information
- Coding Sequence
- ATGCTAAGATTGAGAACTACAGGCCGGCCTTTGTTTTCAGATGAGCCGTCAGGCCCATACGCCCGAAGCACCACAGAACGACGGCGGAAAAACCTCGAGATCGTTTTCAACAACACCTCAATTATACCCTTCAAATGGAAGGGAAAACACATATGTTTCTATTGCGGCGAAACATTCGCAGAATACGCGCAACTTAAAAAACACACTATAGCTCACGGCCCGTGTACGACTAAAGATTACTCTCTAAAGATCATCAAAGGGAATCACATTGAAGTCAAAATCGATGTTTCCGATATCGTTTGTAACATTTGCAACGAACCGTTTCCGAAGTTCGACGAAATTGTCGATCATTTGATCGGCAAACACAAGTTCGACTACGATAAAACTATAGATACTGAAATCGTTGAATACAGACTGGCAGATTGCCGATGTCTGTACTGTGATGAAGAGTTTAGTTACTTCGGTAGATTAGTATCCCATGTCAATATGTGCCATCCGCAAAATAGCTTCATTTGTAACGAATGCGGTGGCACCTTCAACAAGAAAAGAGATCTGAGCGAACATATTAGGAGTAATCATAAGGAAGGCGGTTACTCTTGTAAACAATGCTCAGAAGTTTTCGAAACGAAAAATCTGTTGTTGAAACATCAAAACAGCTATCACTTCCGTCGATGCAAGCATTGCAGCGAATCGTTCTCTTCAAAACTGCTTCTGCAGAAACATATGGAGATTGAACATCCCAACGAACTGTCAGACGACAGTCGCCAATGTAAATACTGCATGAAAGAGGTCCATACGAAACAGGGCTTGAGACAGCATTTGGGTAAATGCAAAGTGAGGATGTTAGCAGAATCGCTGAAGCCGCCTGAGAATGAAACAAATAACGTGAATCTCGGTCCGAGGAGGCGTCAAAACGTAGCTCTAATTCGTCACAATATCGTCACCGTTCTGAATACATCCACAGCTATTCCGTTCAGATACTTTACCTCGTATGTCTGTTTCTACTGTACGATGAAATTCGTCGACTTTGAAGAGCTAAGAGCTCATACTCTTATGGAACACACGATGTGCGATTTGAAATCGAAATGCGTCAAAAAAATCAAAGGCGAAAGAACTACAGTCAAAATAGATATATCCGCGTTCACTTGTAAAATTTGCTCGCAACCCGTCCAAAGTCTAGAAGATCACATAGATCATATAACCAACgaacataatataaaatacgaCAGGAACGTATCCGGTTGTTTCGAGCCGTTCAAAATCGTCAAAGAAAACATACCTTGCTTAAAATGTCCTCTAACATTCCGCTATTTTGGCATTCTCCTTCGTCATATAAACTCTACACATTCCGGGAACAAAGGTATTTGTGATTTCTGCGGCCGTAGTTTCAAAAACGTTGCCAATTTGAAAGTTCATATTAACCACGCTCACACAGACTCCATAGAATGCGACGTTTGTTCGGCAAAATTCCGAAACCAGTGGTGTCTATCGCGCCATAAGGCGAAAAACCACGACGCGAAAGACTTCAAATGTCCTAAATGTCCAGAAAAGTTCCAATCGCAGTATCAAAAGCAAAAGCATTTGATCAAAATTCACGGCGAAGGCCACAAATGTATGTATTGTCACCGTATGTTTACTAGAAACTCGTTTATGAAAGATCATATCAGGCGTACACATCTCAAAGAGAAAAATGTGCCATGCACTCTATGCAACGAGAAATTCTTCGACAATTATCTGTTAAAAATGCATATGGCTAAGCATTCGGGCGATCGTAAGTACGTCTGTGGTATCTGTGGCAAGACTTTCCTAAGAAAAAGTAACTTATATTCGCATAACGAAATGCATAAGAAGTACGGTCATGTGCAAAACGAAGGCAATATTAACAGTGAGTAA
- Protein Sequence
- MLRLRTTGRPLFSDEPSGPYARSTTERRRKNLEIVFNNTSIIPFKWKGKHICFYCGETFAEYAQLKKHTIAHGPCTTKDYSLKIIKGNHIEVKIDVSDIVCNICNEPFPKFDEIVDHLIGKHKFDYDKTIDTEIVEYRLADCRCLYCDEEFSYFGRLVSHVNMCHPQNSFICNECGGTFNKKRDLSEHIRSNHKEGGYSCKQCSEVFETKNLLLKHQNSYHFRRCKHCSESFSSKLLLQKHMEIEHPNELSDDSRQCKYCMKEVHTKQGLRQHLGKCKVRMLAESLKPPENETNNVNLGPRRRQNVALIRHNIVTVLNTSTAIPFRYFTSYVCFYCTMKFVDFEELRAHTLMEHTMCDLKSKCVKKIKGERTTVKIDISAFTCKICSQPVQSLEDHIDHITNEHNIKYDRNVSGCFEPFKIVKENIPCLKCPLTFRYFGILLRHINSTHSGNKGICDFCGRSFKNVANLKVHINHAHTDSIECDVCSAKFRNQWCLSRHKAKNHDAKDFKCPKCPEKFQSQYQKQKHLIKIHGEGHKCMYCHRMFTRNSFMKDHIRRTHLKEKNVPCTLCNEKFFDNYLLKMHMAKHSGDRKYVCGICGKTFLRKSNLYSHNEMHKKYGHVQNEGNINSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01501395;
- 90% Identity
- iTF_01501395;
- 80% Identity
- -