Tabs032589.1
Basic Information
- Insect
- Tuta absoluta
- Gene Symbol
- -
- Assembly
- GCA_029230345.1
- Location
- CM055309.1:7234705-7237092[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 4.8e-06 0.00047 21.5 4.2 1 23 10 33 10 33 0.95 2 20 0.00055 0.054 15.0 0.3 2 23 39 61 38 61 0.94 3 20 2.2e-05 0.0021 19.5 0.2 2 23 70 92 70 92 0.97 4 20 3.4e-05 0.0033 18.8 3.4 3 23 102 123 100 123 0.94 5 20 3e-05 0.0029 19.0 2.9 2 23 131 153 131 153 0.97 6 20 4.8e-06 0.00047 21.5 2.5 2 23 161 182 160 183 0.95 7 20 7.9e-07 7.8e-05 24.0 0.8 1 23 189 212 189 212 0.98 8 20 0.6 58 5.5 0.6 1 23 220 243 220 243 0.77 9 20 0.0033 0.32 12.6 3.5 1 23 267 290 267 290 0.95 10 20 0.00052 0.051 15.1 2.3 1 23 324 347 324 347 0.96 11 20 0.8 78 5.1 0.3 2 21 355 374 354 375 0.90 12 20 0.027 2.6 9.7 4.2 1 23 383 406 383 406 0.95 13 20 6.9e-05 0.0067 17.9 2.6 1 23 429 452 429 452 0.97 14 20 1.1e-05 0.0011 20.3 0.6 3 23 460 481 460 481 0.98 15 20 3.7e-05 0.0036 18.7 2.2 2 23 488 510 487 510 0.94 16 20 0.0085 0.83 11.3 2.2 1 23 516 539 516 539 0.97 17 20 1.8 1.8e+02 4.0 5.8 2 23 547 569 547 569 0.95 18 20 0.00022 0.021 16.3 0.1 1 23 576 599 576 599 0.98 19 20 0.0043 0.42 12.2 0.6 1 20 606 625 606 629 0.90 20 20 0.02 1.9 10.1 2.7 3 23 644 665 643 665 0.91
Sequence Information
- Coding Sequence
- ATGTTTCATACACTGAACACACTGGATTTTGTGTGTGATTATTGCAGTCGCACTTTCACACGAAAGTACAATTTACAAACTCACATCGAAAATTGTCACATTAATTCTTCTTGTTCATGCGATGTTTGTGGACAAACCTTTGGCAGTCCAGCAGGTTTGCAGCTGCATTACTCCAGAGGACACAACCGATTCGATGAGCCATTTCCAGAATGTGATGTGTGTGGTCGTatatttacgagaaaacaaaatattatgtcgcATATGATTACTGTTCATTTACAAGGCATGGGTTCGGACATTTGTTGCGAATTGTGCAATAAAAATTTCACCACTGAAAGAAATTTGAAGAGACACATAAAACAATTACATAATCCCGCCGCGGAGTACCCGACTTGTGACGAGTGCCATAAAGTTTTCAAAGGAAAACATTCTTTGATCACTCACATCCAAACTGCTCACACCTCCGACAAAGGATTGATAAAATGTGATCTATGTGATAAAGTTTATACTAACAACAGAAACTTAAAAAGGCACACAGAGATGCACCATGGAGAGAAAGAAGAATACAGATGCGAAATATGTCCTAAAGTTTACACCTCTAACCAGAGTTTGAGGCGGCACTCAAGAACAGCTCATAATACTGATAGCAATGATGAGTACAAGTGCGATTATTGTGACAAGCTTATACTAGGGAAGGAGAATCTTGACAGTCATATTCAATTTTATCATAAACCAGAGAGTTCTAGTTCGAGTAGCTCAAACGAAGCTGACTCTCCGGATGAAGATTTCAACTTTGATTATGCTTGCGAGAATTGTGCGCGTTGCTTCAAAAATGAACAATGTCTTCGTCAACATATAAAAGCTGATCATTCTTTTAAAACTTTCTACAAGTATTGCAGAAATTCTCTTTTGAAACAAGCAAAtgaaagagaagagagagaggaTAGTCCCATAAGACAAAACGTGTTCTATAATTGTGAGTTTTGCCATAACGTTTTTACGAACGTGTATGAATTAAAAGACCATATGAAATTAAGTCATGACAAGGAATACTGTCTATCTTCATGTAATGTGTGTTTCACAAAGTTTTACAGCAAAGAAGCTATTTtggaacataaaaaaatatgtattcccCCACCTAACGCACATTCTTGCAGTCATTGTGACAAACTATTTACAGATATCTCAAGCCTAGAATTTCATACAAGAATTTTCCACCCTCAAGCTCAGATTGCAGACTCAAACATAAGTTCCACAAATGTGGATTATTCTCTCGAAGGAGCTTTTAAATGCCCTGATTGTGATCGCGTTTACTACAGCGACAGATCTTTGAAACACCATATAAAACTTAAACATACTACAGATGAAGCTATGGGATGTCCGTATTGTGGCAAAGTTTGCAATAACAAATACTATCTGGCTTCTCATATAAAAATCGTCCATTCTAATGACACTTGGTCGAAGTGCGATTATTGTGACAAACAATTCAAGTCTAAAAGAAACATTAGAAGACATATCGAATACACTCATTTGGGAATGCAGAGATACAAATGCATTGAATGTGAGACTTTATTCAAAGAAAAGAGAAGTTTGCGGAAACACGTTCGAACTAAACATCCTGATTCCGCAGTGTTTCCGCAATGCCATTTCTGTTACAAGCGATTCGAGTCAGCAAAGTCTTGCAAGATCCATTTAAAACTATTACACTCATTTAATATGAATACATATCCTTGTGATTTGTGCTCCGTTTCATTTAGCTCAAAAGAAGCTCTGGACATTCATCTTCAAACGAAACATTTAGCCGAGGATGAAATATATAAATGCGAAGAATGTAATCTAGTTTTCAGAGGACTAGAAAAGTTTGAGCGTCACAATGATCTCACGCATGTCAATATTGTAcctaatataaaacaaaaagttttgCCGAGATGCATCATTTGTATGAAAGATTTCAGTACAAGAAAAACATTGAAAAGGCACATCAAAAAGTTCCACGATGTTTTTGATGTTGACGATCTGGCTACTTTCGGTTCTCGAAGACGTGTATTTAACGTTGAATGTGAAGACTGCATTAAAAATTTCAATGATGACTACTACTTCAAAGTATATGAAAAGCTTAAGCATTCAAAAGAGGCTGTAATATTTAAATGCGAAACATGCGTTTCATCTTATAACACTTTGGAATATTCAATACAACGATATAAGATGGTGAATGTAGAAATGTGCAGGGGTAAGATGATCCTGAGCGAATTATGCACAGCTGAAATGTCAGAAGATGAATATGCAGGATTCGGGTCCTTGCATGAGATGATGGAACCTGAGAGTACTACGAACGATATTCAGATCAAGAGTGAACCAACAGAGGAATTGTCAGACGATGATTGctaa
- Protein Sequence
- MFHTLNTLDFVCDYCSRTFTRKYNLQTHIENCHINSSCSCDVCGQTFGSPAGLQLHYSRGHNRFDEPFPECDVCGRIFTRKQNIMSHMITVHLQGMGSDICCELCNKNFTTERNLKRHIKQLHNPAAEYPTCDECHKVFKGKHSLITHIQTAHTSDKGLIKCDLCDKVYTNNRNLKRHTEMHHGEKEEYRCEICPKVYTSNQSLRRHSRTAHNTDSNDEYKCDYCDKLILGKENLDSHIQFYHKPESSSSSSSNEADSPDEDFNFDYACENCARCFKNEQCLRQHIKADHSFKTFYKYCRNSLLKQANEREEREDSPIRQNVFYNCEFCHNVFTNVYELKDHMKLSHDKEYCLSSCNVCFTKFYSKEAILEHKKICIPPPNAHSCSHCDKLFTDISSLEFHTRIFHPQAQIADSNISSTNVDYSLEGAFKCPDCDRVYYSDRSLKHHIKLKHTTDEAMGCPYCGKVCNNKYYLASHIKIVHSNDTWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPDSAVFPQCHFCYKRFESAKSCKIHLKLLHSFNMNTYPCDLCSVSFSSKEALDIHLQTKHLAEDEIYKCEECNLVFRGLEKFERHNDLTHVNIVPNIKQKVLPRCIICMKDFSTRKTLKRHIKKFHDVFDVDDLATFGSRRRVFNVECEDCIKNFNDDYYFKVYEKLKHSKEAVIFKCETCVSSYNTLEYSIQRYKMVNVEMCRGKMILSELCTAEMSEDEYAGFGSLHEMMEPESTTNDIQIKSEPTEELSDDDC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00178471;
- 90% Identity
- iTF_00844615;
- 80% Identity
- -