Tabs027346.1
Basic Information
- Insect
- Tuta absoluta
- Gene Symbol
- -
- Assembly
- GCA_029230345.1
- Location
- CM055302.1:14253321-14266733[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.9e-31 6.1e-27 96.0 1.7 133 274 33 170 30 171 0.95 2 2 1 7.8e+03 -2.7 0.0 83 189 193 214 180 226 0.46
Sequence Information
- Coding Sequence
- ATGGGCGATGACCTGCGGTGCCATCAGCCAGCGCTTGGCTCGCTGTTGGCGTCGCAGAGAGGGATTCCCCAGCGGTGCCGGGACCCTCCTGGAACGGTAGCGCCTCGTTTACTGCAGGCGGTGAGGATCTGGGACCCCACGGGTGACACACAACCGCTACACCAGTGGATACTGCCGTGGCACTCGCTGGCTGGCGAGGCGCTGGCTAGCACTGTGTACCCGCTGATCCGGTCGCGGCTCGCGAGCGCGCTGACCGCGTGGCACCCGGCCGACGGCTCCGCCAGGCCGCTACTCGCCGCATGGAAGGTACCCTGGGGTTCTGCACTGACAGCGATGTTACATCAACACATCGTGCCCAAACTAGAGCATTGCTTACAAACCGCGCCATTGGAGCTCGTTGGCAGAGAGAATACGGCATGGCTCTGGTGCGTGGACTGGTTGGAACTACTCGGCGCGCCCACAGTAGCAGCATTAGCAGCACGAGCGTTACTACCGCGGTGGCTCGCCTCGCTCGCTGCCTGGCTGAACACTTGCCCCCCACATCACACTGTGCTCAGCTCTTACACGGATTTTAagaaAATGTTCCCCGAAGAGGTTTTAAAAGAGCCGGCGGTGCGCGACGCGTTCCGAAAAGCCCTAGACATGATGAACCGCAGCACAGACATCGACAGCGTGGAGCCTCCGCCCCCGCCGCGCTACAGCGCCCCCTCGGCCTCCGCCCCCGACAAGGACTCCACCAAAATATCAGAAATACTATCCTCTATCACCCAACATAAATCTTTCTCGGAACTTCTAGAATCTAAGTGTATCGAAAAGGGTATAACGTTTGTGCCGATTCCCGGTAAAACCAGGGAAGGGAGGCCTTTGTATAAGATTGGTAATATGCAGTGTTATGTTATAAGAAATGTGATTATGTATTCGGATGATAGTGGCAGGACTTTCTTGCCAGTTGGTTTGGATAAGTTATTGAATATGGTTGATGATTGA
- Protein Sequence
- MGDDLRCHQPALGSLLASQRGIPQRCRDPPGTVAPRLLQAVRIWDPTGDTQPLHQWILPWHSLAGEALASTVYPLIRSRLASALTAWHPADGSARPLLAAWKVPWGSALTAMLHQHIVPKLEHCLQTAPLELVGRENTAWLWCVDWLELLGAPTVAALAARALLPRWLASLAAWLNTCPPHHTVLSSYTDFKKMFPEEVLKEPAVRDAFRKALDMMNRSTDIDSVEPPPPPRYSAPSASAPDKDSTKISEILSSITQHKSFSELLESKCIEKGITFVPIPGKTREGRPLYKIGNMQCYVIRNVIMYSDDSGRTFLPVGLDKLLNMVDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00178175;
- 90% Identity
- -
- 80% Identity
- -