Tabs007793.1
Basic Information
- Insect
- Tuta absoluta
- Gene Symbol
- -
- Assembly
- GCA_029230345.1
- Location
- CM055286.1:17261932-17262429[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.4e-14 2.1e-11 44.4 0.1 1 41 15 56 15 59 0.89
Sequence Information
- Coding Sequence
- ATGGTGAGGAAATACGAAAGAATGAGCGGGCGTCAGTCGTGGAGCGAGGAGGACATGGCCCGGGCCGTCGCCGCCGTGGTGTCCGGCAAGATGGGCTACAAGCTCGCCGCGCGCACCTTCCACATCCCGCGCTCCACGCTGCAGCGGCGCGCCAGCAAGATCCGCTACCAGCACCCCACAGACGACAAACCACTCATGGGACAATACCGCCGCGTCTTCACAGAGAGCCAGGAAAAAGACCTCGTCGGCTACATCAAAAGCATGCAGCAGTTCTTCTTAGGCGTCTCCAGACGCGACATTCGCGAGATCGCCTTCCAGTACGCCGAAGACAACAACTTGAACCATCCGTTCGATACGAACACGCGGATGGCAGGCGAGGACTGGGTAAGAAACTTCTTGAAACGCAACCCCGAGCTGCTCCATAAAGCGGAGAAGGAGTTCGACAATGAGCCGGTGAACTTTGACCAGTTTTACCACTTCATGTGTCCATTGTCATGA
- Protein Sequence
- MVRKYERMSGRQSWSEEDMARAVAAVVSGKMGYKLAARTFHIPRSTLQRRASKIRYQHPTDDKPLMGQYRRVFTESQEKDLVGYIKSMQQFFLGVSRRDIREIAFQYAEDNNLNHPFDTNTRMAGEDWVRNFLKRNPELLHKAEKEFDNEPVNFDQFYHFMCPLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00786686;
- 90% Identity
- iTF_01336754; iTF_00844251; iTF_00275178; iTF_00150403; iTF_01403364; iTF_00177997;
- 80% Identity
- -