Tabs000159.1
Basic Information
- Insect
- Tuta absoluta
- Gene Symbol
- Unr
- Assembly
- GCA_029230345.1
- Location
- CM055282.1:3058146-3096808[-]
Transcription Factor Domain
- TF Family
- CSD
- Domain
- CSD domain
- PFAM
- PF00313
- TF Group
- Beta-Scaffold Factors
- Description
- In molecular biology, the cold-shock domain (CSD) is a protein domain of about 70 amino acids which has been found in prokaryotic and eukaryotic DNA-binding proteins. When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees Celsius, a 4–5 hour lag phase occurs, after which growth is resumed at a reduced rate.During the lag phase, the expression of around 13 proteins, which contain cold shock domains is increased 2–10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 6e-16 5.8e-12 46.4 0.0 2 65 110 172 109 173 0.95 2 9 0.00027 2.6 9.0 0.0 17 58 204 245 191 253 0.78 3 9 3.2e-17 3.1e-13 50.5 0.3 2 65 263 322 262 323 0.96 4 9 0.032 3e+02 2.4 0.0 40 64 388 414 379 416 0.84 5 9 2.8e-12 2.7e-08 34.6 0.2 2 51 429 475 428 486 0.95 6 9 0.18 1.8e+03 -0.0 0.0 44 64 567 589 560 591 0.86 7 9 6.4e-15 6.2e-11 43.1 0.3 1 57 609 664 609 674 0.87 8 9 0.89 8.6e+03 -2.2 0.0 40 52 733 745 730 752 0.80 9 9 6e-13 5.8e-09 36.8 0.0 3 65 964 1026 962 1027 0.87
Sequence Information
- Coding Sequence
- ATGTCTAGCAATCCTCAGTGGAAAATGTTCCAGCCGCCAGAATCACACTCCACTCCCTTGCAGGACATTCTAGACCTCCAGCACTCCAACATGCAAGTGAAACAATACCGGAATGGTACTTACAGCAGTGAGTACCCTAGCTCCCCCAGAGACAGTTACAATCACATGGGGAAGCAAAGTGGAGGGAGTCGGTTTGGCATCGGCAATTTTAATCTTGACTCATGCTCCATCGGAGACTCTGCTGGGGTGTTCTCATCTGGTTCCACTAATACTAACAACACATCATCTCAATCATATGATTCTACAAACCACCCacctattagagaaacagggaTTATTGAAAAATTACTGCATTCATACGGGTTTATTCAATGTTGTGAGCGACAAGCCCGTCTGTTCTTTCACTTCAGCCAGTTTACAGGCAACATTGAACATCTCAAAATTGGTGATCCTGTGGAATTTGAAATGACCTATGACAGAAGAACAGGAAAACCCATTGCTTCCACGGTCACTAAGATTGCACCCGAAGTGGTGCTGAGCGAGGCAAGGGTCACTGGCACTGTTACTACAGAGGTTAAAGGGGAGGGTTCCGGTGACAATACTGGCCGGATTTCATATGAAAACCGTGGCGAGTGCTTTTTTTTACCTTACACTAAAGACGACGTCGAAGGAAACGTTACATTGCGCACTGGGGATGCCGTTAGTTTTCAGATCGCTACCAATCAAAGGGGCACTTTGGGTGCTTGTCACGTGCGATTCGAGAACCCTGGTAATCCAGTGAAATATCATGGCGTAGTTTGTTCAATGAAAGAAAATTTTGGATTTATCGAACGCGCCGACGTCGTCAAAGAGATATTCTTTCACTTTTCTGAAGCTAAAACTAAAGAGGATCTGTGTTTAGGCGACGATGTGGAATTTATTATACAAACTAGAAACgggaaagaaGTAGCATGCCAAATAACGAAGCTCCCTAGCGGGTCGGTTGTGTTCGAGGACGTGAGCCCGGAGATAATGCGCGGACAGGTGCTGAAGCCGCTGGAGCGCGGGAACGTGGTCCGGCCGCCGCAGAACGACCCGCTGCCCGGGCGGATCCGATATCGCGCTGCCGACCACTCCGAGGTCGAGGTGCCTTTCGGCGATAAGGACCAGTGTGGCGAGTTCACACTGCGCCACGGCGACTGGGTGCAGTTTCAAGTGGCGACCGACCGCCGGGATCAACTGAAGCGCGCCACCAACATCTCCTTGCTTGATGAGTCCTTCAACGTCTCCGGCGAAAGGAGGGAACAGGGCGTGGTGTGCTCGCTGCGCGAAGGGTTCGGCTTCATTCGCTGCGTGGAGCGCGAGCAGACGCTGTTCTTCCATTTCGCCGAAGTGCTGCGCCTCGGACAGGAGCTGAGCGTCGGGGACGAGGTGGAGTTCACTGTGGACCCTGTGTCGTCGTTCTCGAACATGAATACGCGGGTCTCGGCGATCCGCATCAAACACCTGCCGCCGGGCACCGTGCACTTCGAAACACTGGTCGAGCGCGGCGTCCGCGGGGTCGTCACCAAAGAGGCGCAACTGTACTCGTCGACCAATAGCCCCACGGCTCACGACCCTAACGACCAAAACGGGATCATCAGCTGTCAGATAAACGGCGCCAAGAAGACCATCCAGTACAACGCCAGGAAATGCGAGTCCAAGATGCTGCCACGCATTGGGGACAAGGTCGTCTTTGACATCTACCAGATGAAGAGCACCAAGGAGCTCGTGGCGCTGTCGGTGCAAACACAGCACAGCCTGACGAACGGCGCGAgcaacggcggcggcggcgcgcggccaGCCATGCAGGGGTTCATCGCGGCCCTGAAGGACGGCTTCGGGTTCATCGAGACCGCCGACCACACCAAGGAGGTGTTCTTCCACTTCAGCAATCTGGAAGGCGTCGCCGACACGCTGGAGCTGGGCACCGAAGTGGAGTACACACTGGGGCGCGTGAACGGCTCCGGCGGCGGGTGCGCGAGCGCGGAGTTCGTGCGCGTGCTGCCGCGCGGCGCCGTGCCCGTCGCGAAGCCACTCGAGCCCACGCACAACGGCACCGTCACGCGCACGCTGCGAGCGCTCAACCCGGACCAGCCGCAGTACTCAGGACTGATCCAAGTAGAAGGCGGTACTTCATACGAGTTCGGCATAATGGGTCTGGCGTGCAAGCGCGAGATTCTGCAAGTAGGCGACCCGGTCACCTTCCAGGCGGACATCGAGGGCCGCGCCACCAACATCGTGCCCATCAGGAAGAAGAGACGCGCTATCGTCGACGCTATCAAAGGTACCAgcgacaacagtccactggtggacacaGCCCTGCCCCTGTTAGAGAGATCCTGCAAGCTATCGAGGGCCGCGCCACCAACATCGTGCCCATCAGGAAGAAGAGACGCGCTATCGTCGACGCTATCAAAGGAAGAAGAGACGCGCTATCGTCGACGCTATCAAAGGTACCAgcgacaacagtccactggtggacacaGCCCTGCCCCTGTTCGAGAGATCCTGCAAGCTATCGAGGGCCGCGCCACCAACATCGTGCCCATCAGGAAGAAGAGACGCGCTATCGTCGACGCTATCAAAGGTACCAgcgacaacagtccactggtggacacaGCCCTGCCCCTGTTAGAGCGATCCTGCAAGCTATCGAGGGCCGCGCCACCAACATCGTGCCCATCAGGAAGAAGAGACGCGCTATCGTCGACGCTATCAAAGGAAGAAGAGACGCGCTATCGTCGACGCTATCAAAGGTACCAacgacaacagtccactggtggacacaGCCCTGCCCCTGTTAGAGAGATCCTGCAAGCTATCGAGGGCCGCGCCACCAACATCGTGCCCATCAGGAAGAAGAGACGCGCTATCGTCGACGCTATCAAAGGTGGTTTCGGCTTCCTGTCTCTAGAGGCGGAAGAGAACCGGCGGCTGTTCTTCCACATGTCTGAGGTGCGCGGCCACCCGTCCGACCTGCAGCCCGGCGACGCGGTCGAGTTCGTCATGCTGACCAACCCGCGCAACGGCAAGTGCTCCGCCTGCAACGTCGTCAAAGTCAGCAAGCCGGCGGCGACGGCGAAGGCGCGCACGGAGCGGCCGGAGCGCCTGCTGGCGCGCCTGCGCACCGCCTCGCTGGAGGAGTCGGGTGCGCCGCGCGTGGTGATCGCGCGCGCGCCCCGCGGGCCCGACGGCACGCGCGGGTTCCGGCCGCGCCGCCCGCTCGCCGGTAAGGAAACAACATTAGGTAATGTAGCCGGTATTTATCGAGCTATAGGcggggaagtgggcagcgcgagcttGTAA
- Protein Sequence
- MSSNPQWKMFQPPESHSTPLQDILDLQHSNMQVKQYRNGTYSSEYPSSPRDSYNHMGKQSGGSRFGIGNFNLDSCSIGDSAGVFSSGSTNTNNTSSQSYDSTNHPPIRETGIIEKLLHSYGFIQCCERQARLFFHFSQFTGNIEHLKIGDPVEFEMTYDRRTGKPIASTVTKIAPEVVLSEARVTGTVTTEVKGEGSGDNTGRISYENRGECFFLPYTKDDVEGNVTLRTGDAVSFQIATNQRGTLGACHVRFENPGNPVKYHGVVCSMKENFGFIERADVVKEIFFHFSEAKTKEDLCLGDDVEFIIQTRNGKEVACQITKLPSGSVVFEDVSPEIMRGQVLKPLERGNVVRPPQNDPLPGRIRYRAADHSEVEVPFGDKDQCGEFTLRHGDWVQFQVATDRRDQLKRATNISLLDESFNVSGERREQGVVCSLREGFGFIRCVEREQTLFFHFAEVLRLGQELSVGDEVEFTVDPVSSFSNMNTRVSAIRIKHLPPGTVHFETLVERGVRGVVTKEAQLYSSTNSPTAHDPNDQNGIISCQINGAKKTIQYNARKCESKMLPRIGDKVVFDIYQMKSTKELVALSVQTQHSLTNGASNGGGGARPAMQGFIAALKDGFGFIETADHTKEVFFHFSNLEGVADTLELGTEVEYTLGRVNGSGGGCASAEFVRVLPRGAVPVAKPLEPTHNGTVTRTLRALNPDQPQYSGLIQVEGGTSYEFGIMGLACKREILQVGDPVTFQADIEGRATNIVPIRKKRRAIVDAIKGTSDNSPLVDTALPLLERSCKLSRAAPPTSCPSGRRDALSSTLSKEEETRYRRRYQRYQRQQSTGGHSPAPVREILQAIEGRATNIVPIRKKRRAIVDAIKGTSDNSPLVDTALPLLERSCKLSRAAPPTSCPSGRRDALSSTLSKEEETRYRRRYQRYQRQQSTGGHSPAPVREILQAIEGRATNIVPIRKKRRAIVDAIKGGFGFLSLEAEENRRLFFHMSEVRGHPSDLQPGDAVEFVMLTNPRNGKCSACNVVKVSKPAATAKARTERPERLLARLRTASLEESGAPRVVIARAPRGPDGTRGFRPRRPLAGKETTLGNVAGIYRAIGGEVGSASL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -