Tnot004266.1
Basic Information
- Insect
- Tupiocoris notatus
- Gene Symbol
- Trl
- Assembly
- GCA_037159825.1
- Location
- JASJUZ010000099.1:671410-679526[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.36 8.4e+03 -2.6 0.0 32 42 17 27 16 31 0.83 2 3 0.53 1.2e+04 -3.2 0.3 9 25 160 176 152 181 0.63 3 3 8.9e-16 2.1e-11 44.1 0.1 16 50 196 230 183 234 0.83
Sequence Information
- Coding Sequence
- ATGAGTGCACCACAGTTGTACAGTTTATCGTGGGGTGAGCAAAATTCTGCGTTAATCTCGACCGCGCGAAACCTCCATCGGCTGGGAGATTTAGTCGATGTCACGCTCTCGGCTGAAGGAAAAATGTTCCCTGCACACAAACTTGTCTTGAGCGCTGCGAGCCCTATGCTAATGGAACTTTTAAAGagcACCAAGTGCGAGCATCCGGTTGTCATGTTGGCTGGAATATCGGCGGTAGACCTTGAAGCCATTCTGCACTTAATTTACCATGGTCAAGTCAGTGTGGAAACAGATAGTTTAGCTTCTTTAATTCAAGCTGCACAGTGTCTTGACATACAAGCGCTTACTCCTCTGTTATCAGCTTCACCTCCTAAATTTCCTACGACGCCGCTTTTTGATTTGCACAATACGATTGACCACCAAACGGACGCTTTGAACATTCATGGCTCTAAGAAGAAACACCGATCCAAAGGGAAGCCACTGCTGATCGAAAAGGATCAGAGCGAAGATGGTTCTTCCAGTCCAGCTAGGCCTTCACCGATTGAAAATCATACACCTGCATCTGAAGATGGAAACGaaatgaaaaaaccgaCCCTTTCATCCGATATGCCTGTATCCTGCCCGGTTTGCCATACAATCATTCGGCAGTCAAGAAACTTGCGACGTCATATGGAACTAATCCACCTGCGTACTGAAGGAACTGCTCGTCCcccgaagaaaaaatcaaagaaaaacgaATCAGCATCAAGCACGGGCAGTCCGTCTCCTTCAGTCAGTATGCGAGATAACAATGATGATatgACTCACGACAGTCTGATTTTGGCTGCCATGGCGTCCCGTCTTGTCAATTCTTCATTGGACGAAGAGCAGGGCCCTAGCCAACCAAATGACTCGCCTGAGGAATCTTCGTACTCTCTTTCTCATAGCACTCAAgAAGAGGTCAATCGGAAAGCAAGACAAATGGATCAGGCATTACGGGTGCCTCATCCATTGGTTTCAGCCGCCGGGCAACTTCTAGATCAGGTACTCCCATCCAGCAATCCGCCTCTCATTCGCCCGCCTCCGCTCGCCGGTGGAACAGTGGGGGCGGCAGCGGGTGCTCATGGAGGGGAGTCGGCCCCTCTACTCGCTTGTTCTCTCGCTGATCAATATGAGAAGAAGCCGACAGACTTGACCGAACTGCAAGGGTCGGCCGAAGAGAATTCGCTGTTTTGTCGCGCCGCCGCCGTCCGTCGACCGTCGGAGGGGCGTGTGTTGGTTATCGTGCGACAATCCTATGTTGTGAGTGTTCCGCCGGCGGACCATGGGACGACCGTGGGACGATCAGGGGACGAGGACCGTCTGCGCCACGCTCCTCGTCACCGCGGCCCTCTCGTCCCTCATTCAACTGCCAGCATTTGCGTCGGCCGAAAACCAAGAATGTGA
- Protein Sequence
- MSAPQLYSLSWGEQNSALISTARNLHRLGDLVDVTLSAEGKMFPAHKLVLSAASPMLMELLKSTKCEHPVVMLAGISAVDLEAILHLIYHGQVSVETDSLASLIQAAQCLDIQALTPLLSASPPKFPTTPLFDLHNTIDHQTDALNIHGSKKKHRSKGKPLLIEKDQSEDGSSSPARPSPIENHTPASEDGNEMKKPTLSSDMPVSCPVCHTIIRQSRNLRRHMELIHLRTEGTARPPKKKSKKNESASSTGSPSPSVSMRDNNDDMTHDSLILAAMASRLVNSSLDEEQGPSQPNDSPEESSYSLSHSTQEEVNRKARQMDQALRVPHPLVSAAGQLLDQVLPSSNPPLIRPPPLAGGTVGAAAGAHGGESAPLLACSLADQYEKKPTDLTELQGSAEENSLFCRAAAVRRPSEGRVLVIVRQSYVVSVPPADHGTTVGRSGDEDRLRHAPRHRGPLVPHSTASICVGRKPRM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01500502;
- 90% Identity
- iTF_01500502;
- 80% Identity
- iTF_01500502;