Tsal011189.1
Basic Information
- Insect
- Tuberolachnus salignus
- Gene Symbol
- stc
- Assembly
- GCA_956483605.1
- Location
- OY101433.1:18924422-18933623[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.76 1.8e+04 -3.7 1.6 15 19 152 156 151 156 0.81 2 16 0.031 7.1e+02 0.7 0.5 4 10 184 190 183 190 0.96 3 16 4e-07 0.0094 16.3 13.8 3 18 205 220 204 221 0.95 4 16 1.9e-05 0.43 11.0 12.9 3 19 259 275 257 275 0.91 5 16 0.31 7.1e+03 -2.5 2.1 5 10 277 282 277 286 0.85 6 16 0.21 4.8e+03 -1.9 1.2 6 10 305 309 304 309 0.90 7 16 1.1e-08 0.00025 21.3 14.4 1 19 315 333 315 333 0.98 8 16 0.1 2.4e+03 -1.0 0.3 5 10 364 369 364 370 0.95 9 16 0.0001 2.3 8.7 13.9 4 18 382 396 375 397 0.87 10 16 0.89 2.1e+04 -4.0 2.5 5 10 423 428 423 428 0.94 11 16 0.00065 15 6.1 5.1 1 11 434 444 434 447 0.93 12 16 0.068 1.6e+03 -0.4 0.7 4 10 449 455 448 455 0.91 13 16 4.2e-07 0.0098 16.3 8.2 1 18 461 478 461 479 0.92 14 16 1 2.3e+04 -7.9 13.4 8 18 524 535 512 536 0.78 15 16 0.017 4e+02 1.5 13.9 1 16 572 587 562 596 0.76 16 16 7.7e-06 0.18 12.2 17.3 1 18 602 620 602 621 0.89
Sequence Information
- Coding Sequence
- ATGCCTCGAGCAAATAGTCGTAAAAGGAATACCCGTCGCAACGCTAATGCAATGCGATTGCCTGCTGTTTCCAATTTATCACCGAATGCTCCAGAATTTGTTCCACTAAATCAAATTAACACCGTCAATAACGAAGATACTTCAAATCAAAAGGAATGTGCAACAGTTCAACCTATGCTGTTGGATTGCGCTTCCAATGAGCCGAATAGTAGTGGgaatagTAATAATTCTGAAATTACAAAAACTATTTCTTTGCCCAATTCTGTCACAAATAAAGGACAACGCGATTTACTTATTAATCTTTTAAACACCAGTAAAGTAGACTGTGTAATATGTTATgagataactaaaaatgtagAACCCATTTGGAACTGTCGTAATTGTTATCAAattatgcatttaaaatgtGTCATGGTTTGGTTCATCAAATCACATCGtgatgGAGTCTGGAGGTGTCCAGCAtgtcaaaatgaaatatttgaaaagccaaattatgtttgtttttgtgGTTCTTTACCAAATCCTTTCTCCAACAATGTAGATACTCCACATTCCTGTGGTCAAGTATGTggactgcaaaaaaaaaattctcataaaGAATACGATGATTGTCGCCATAAGTGTACATTATTATGCCATCCTGGTCCCTGTCCTCAATGTGTTGTACAAGTTTTgagaAAATGTGGGTGTGGAAAAACAAAATCTCATGCGCAATGTGGACTGTCATCTCCAATTTTGTGCACAAATCTATGCTCTAAAAAACTTGACTGCAAATCTCATATCTGTGAAAAACAATGCCATGCTGGTAAATGTGAGCCATGTAAAAAGAACTGTAAACAAGTGTGTTATTGTGGTCAATCACAACGAGAAATGCCTTGCACACCAGAAAATGCATTAGTCGTATATTACAGCTGCCAAAAACTTTGTAACAACAAATTATCTTGTGGAAATCATTCATGTAAAAAATCATGTCACATGGGTCAGTGTGAACCATGTAAATCTTTAGACATTAAATATTGTCCTTGTGGGAAAAGACCATTGACACATGACGAACTTGCCAACCGCATATTATGTACACAACCAATCCCCACGTGTGATCAATTATGTGGAAAACCCTTAGAATGCGGTCCACCTGAGAACCCAcatatttgtgaaaaaaattgTCATGAAGGTCCGTGCGGTCGCTGTGAATACAAAACCAAATATGTGTGTAAATGTGGAAATAAATCAAaggaaataaaatgtaattctgTGACTAGTGAattaacatgtaaaaaaaaatgtaacaagATGATGTCTTGTGGTAAACATAAATGCATGGTAATGTGTTGTAATTCACCAAGTCATGAGTGCAATCGATTCTGTAATGGACTCTTAAATTGTCGTCAACATCGTTGTGATCGTATTTGTCATACAGGCAGCTGCGCTATATGCATTGAAGCAAGTTTTGACGAGCTATATTGTAGATGTGGCAACAGTTTTATTCCTCCTCCAGTCAGGTGTGGTACTCGTCTTCCACTCTGTACATTACCTTGTTCACGCGAACATGAATGTAATCATCCAGCAACTCATATTTGCCACGATGAAGAAGAATGTCCTCCTTGTATAAGTCTTACTAAGAAATTATGTTTCGGTGGTCACGAGttacgtTTTGCTATACCATgtcatattaaaaatgtatcgtgTGGAATGCCTTGTGGTTATCCACTAGCTTGCAAACGACATACCTGTGTAAAACCATGTCATCCACTACCTTGTAATACAGGACTGTGTGAATTACCATGCGAATCGCTAAAACCAGAGTGCGGACATCCGTGTTCTAAACCTTGTCATGATGGTCCATGTCCTCAAGGAGCGTGTAAAAAAATGGTAAATGTCAGTTGTATTTGTGGGAATTTGACCGAAACAAGATTATGTTCAGACGCTAAAGTAGTCGAATATCGTCTTCAGGTTAAAACACAAACTTTGAGTTTTCTTGACAATATTATCAACTCACAGCCGACCATAAAATCATATAAGATTCTGGAATGTACAACAGAATGTGCTAAACTAGAAAGAAACCGACGCATAGCCCTTGCATTGCAAATTCGCAATCCAGATTTGTCACCTAATGTCACTCCACGGTATTCTGATTTTATGAAAGAATTTGCAAAGAAGGATgctaaattttgtaattatatacatGAAAAACTTGCTGAACTTGTCACTAATGCGAAACAATCAAAACAAAATTCACGTAGTCATTCATTTGAAGTGATGAaatatgaaaaacgaaaatttgttCATGAATATTGTGAACATTTTGGTTGTGAGTCAATTGCTTATGACGCTGAGCCTAATAGGAATGTTGTGGCTGTAGCTATGAaagaaaaaTCATGGCTTCCAAATTACAGTGTAGTAGAAGTTATTCAACGTGAAAGTGGATGTCCACGAGTCAACCCATTTGCAAGTATTAAAAAacgtaatactaattttaaataa
- Protein Sequence
- MPRANSRKRNTRRNANAMRLPAVSNLSPNAPEFVPLNQINTVNNEDTSNQKECATVQPMLLDCASNEPNSSGNSNNSEITKTISLPNSVTNKGQRDLLINLLNTSKVDCVICYEITKNVEPIWNCRNCYQIMHLKCVMVWFIKSHRDGVWRCPACQNEIFEKPNYVCFCGSLPNPFSNNVDTPHSCGQVCGLQKKNSHKEYDDCRHKCTLLCHPGPCPQCVVQVLRKCGCGKTKSHAQCGLSSPILCTNLCSKKLDCKSHICEKQCHAGKCEPCKKNCKQVCYCGQSQREMPCTPENALVVYYSCQKLCNNKLSCGNHSCKKSCHMGQCEPCKSLDIKYCPCGKRPLTHDELANRILCTQPIPTCDQLCGKPLECGPPENPHICEKNCHEGPCGRCEYKTKYVCKCGNKSKEIKCNSVTSELTCKKKCNKMMSCGKHKCMVMCCNSPSHECNRFCNGLLNCRQHRCDRICHTGSCAICIEASFDELYCRCGNSFIPPPVRCGTRLPLCTLPCSREHECNHPATHICHDEEECPPCISLTKKLCFGGHELRFAIPCHIKNVSCGMPCGYPLACKRHTCVKPCHPLPCNTGLCELPCESLKPECGHPCSKPCHDGPCPQGACKKMVNVSCICGNLTETRLCSDAKVVEYRLQVKTQTLSFLDNIINSQPTIKSYKILECTTECAKLERNRRIALALQIRNPDLSPNVTPRYSDFMKEFAKKDAKFCNYIHEKLAELVTNAKQSKQNSRSHSFEVMKYEKRKFVHEYCEHFGCESIAYDAEPNRNVVAVAMKEKSWLPNYSVVEVIQRESGCPRVNPFASIKKRNTNFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00341016;
- 90% Identity
- -
- 80% Identity
- -