Cced013550.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cinara cedri
Gene Symbol
stc
Assembly
GCA_902439185.1
Location
CABPRJ010002368.1:1509260-1534491[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.77 1.5e+04 -3.7 1.6 15 19 155 159 154 159 0.81
2 16 0.031 6e+02 0.7 0.5 4 10 187 193 186 193 0.96
3 16 5.4e-06 0.11 12.7 16.0 3 18 208 223 207 224 0.94
4 16 9.4e-05 1.8 8.8 12.9 1 18 260 277 260 278 0.95
5 16 0.42 8.3e+03 -2.9 3.3 6 10 281 285 280 289 0.87
6 16 0.2 4e+03 -1.9 1.0 5 10 307 312 307 312 0.91
7 16 9.5e-10 1.9e-05 24.7 13.9 1 18 318 335 318 336 0.99
8 16 0.24 4.7e+03 -2.1 0.6 5 10 367 372 367 372 0.95
9 16 2.6e-05 0.52 10.5 13.2 4 18 385 399 378 400 0.87
10 16 0.63 1.2e+04 -3.5 2.1 5 10 426 431 426 431 0.94
11 16 0.00051 10 6.4 4.7 1 11 437 447 437 450 0.93
12 16 0.069 1.4e+03 -0.4 0.7 4 10 452 458 451 458 0.91
13 16 1.8e-07 0.0036 17.4 9.6 1 18 464 481 464 482 0.93
14 16 1 2e+04 -4.5 9.6 9 18 528 538 518 539 0.81
15 16 0.049 9.7e+02 0.1 17.5 1 18 575 594 565 599 0.80
16 16 2.9e-06 0.057 13.6 15.9 1 18 605 623 605 624 0.89

Sequence Information

Coding Sequence
ATGCCTCGAACAAGTAGTCGAAAAAGGAATAACCATCGAAATGCTATTGCTACTGCATTGAGATTGCCTACTGATTCCAATTTATCAGCAAATGCTCCAGAGTTCATTCCACTAAGTCAACATAATATAGTCAATAATGATAATATTGCAAATCAAAGGGACAATTCAGCAATTCAACCAATGGCATTGGATGGATGTTCCAGTGAGCCTAATAGTAGTGGGAATGATAATAACTCTGAAGCTACTAAAAGCATTTGTTCTTTACCAAATGCCAACGCAAATAAAGGGCAACGAGATTTACTTATTAACCTTTTAAATACCTCTAAAGTCGACTGTGTAATATGTTATGAGCTAACTAAAAATGTTGAACCGATTTGGAACTGTCGTAATTGTTTTCAAATTATGCATTTAAAATGTGTGATGGTGTGGTTCATCAAATCTCACCGCCATGCTTCCTGGAGGTGTCCAGCATGTCAAAATGAAGTATTTGGAAAACCAAATTATTTATGTTTTTGTGGTTCTTTACCAAATCCTTTTGCTAACAATGTGGATACTCCACATTCCTGTGGTCAAGTATGTGGACTGCAAAAAAAAAATGCTTATGAAGAATACGATGATTGTCATCATAAGTGTACATTGTTATGTCATCCTGGCCCCTGTCCTAGATGTGTTGTACAAGTTCTGAGAAAATGTGGGTGTGGAAAAACTCAATCTTATGCTCAATGTGGACAGTCATCTCCAATTCTGTGCAAAAATAAATGCTTTAAAACATTAAAATGCAACAATCATGTGTGCCAAAAACAATGTCATAGTGATGAATGTGGGCCATGCGATAAACACTGTCAACAAGTTTGTTATTGTGGTCAATCACAACGGCAGGTACGATGTACACAAGAAAATGCCTTGGTGGTATACTATAACTGCGAAAAACTTTGCAACAAAAAACTAGTTTGTGGAAATCATTCATGTCAAAAATCCTGTCACAGTGGTGAATGTGAACCTTGTATAGCATTAGACATTAAATATTGTCCTTGTGGAAAAAGAACATTGACACAGGATGAACTTGCCAACCGCACATTATGTACTTTACCAATTCCCACATGTGATGAAATATGTGGAAAACCTTTAGAATGCGGTCCACCTGAAAGTCCACATATATGTGAAAAAAAATGTCATGAGGGTCCGTGTGCTCGCTGTGAATTAAAAACAAAATATGTGTGTAAATGTGGAAACAAATCAAAGGAAATAAAATGTAATTCTGTGACTAATGAATTAACATGTAAAAGGAAATGTAACAAGACAATGTCTTGTGGTAAACATAGGTGCATTGTAATGTGTTGTAATGCACCAAGTCATGAGTGCAATAGATTTTGTAATGGACTCTTAAATTGCCGTCAACATCGTTGTGATCGTATTTGTCATCCAGGTAGCTGCGCTGTGTGCGTTGAAGCTAGTTTTGAAGATCTGTATTGTAGATGTGGCAACAGTTCTATTGCTCCTCCAGTCAGGTGTGGTACTCGTCGTCCACTATGTATATTACCTTGTTCACGTGAACATGAATGTGATCATCCAGCAACTCATATTTGTCACGATGAAGAAGAATGCCCTCCTTGCATATATCTTACTGAAAAATTATGTTATGGTGGTCATGAGTTACGTTTTGCTATACCATGTCACATAAAAAATGTATCATGTGGAATGCCGTGTGGCTATCCACTACCATGTAAACGCCATACGTGTGTAAAACCATGCCATCCACTGCCTTGTAATACAGGGCCGTGTAACTTACCATGTGAATTGCTAAAACCAGATTGCGGACATCCATGTTCCAAACCTTGTCATGACGGTCCATGTCCTCAGAGAGCATGTAAAACAATGGTAAATGTCAGTTGTATTTGTGGGAATTTGACAGAAGCAAGATTATGTTCAGACACTAAAGTAATTGAATATCGGCTAAACCTTAAAACACAATCAATGAGTCTCCTAGATAATATTATTGACTCACCGCCGACCATAAAATCATATAAGATTCTGGAATGTACAACAGAATGTGCTAAACTTGAAAGAAACAGACGCATAGCCCTAGCATTACAAATTCGTAACCCAGATTTATCACCTAATGTTACTCCACGATATTCTGACTTTATGAAAGAATTTGCAAAAAAGGACCCTCCATTTTGTAATTATGTGCACGAAAAACTTGCTGAACTTGTTACTAATGCAAAACAATCCAAACAAAATTCACGAAGTCATTCATTTGAAGTGATGAAGTACGAAAAACGAAAATTGGTTCATGAGTACTGTGAACATTTTGGTTGTGAGTCAGTAGCTTATGATGCTGAGCCTCATAGGAATGTTGTAGCTGTAGCTCTAAAGGAAAAATCTTGGCTTCCAAATTATAGTGTGGTTGAAGTTCTTCAACGTGAAAATGGATGCCCACGAGTTAACCCATTTGCAAGTATAAAAAACCGTAACACTATAATTTTAAATAAAAAATTGTAA
Protein Sequence
MPRTSSRKRNNHRNAIATALRLPTDSNLSANAPEFIPLSQHNIVNNDNIANQRDNSAIQPMALDGCSSEPNSSGNDNNSEATKSICSLPNANANKGQRDLLINLLNTSKVDCVICYELTKNVEPIWNCRNCFQIMHLKCVMVWFIKSHRHASWRCPACQNEVFGKPNYLCFCGSLPNPFANNVDTPHSCGQVCGLQKKNAYEEYDDCHHKCTLLCHPGPCPRCVVQVLRKCGCGKTQSYAQCGQSSPILCKNKCFKTLKCNNHVCQKQCHSDECGPCDKHCQQVCYCGQSQRQVRCTQENALVVYYNCEKLCNKKLVCGNHSCQKSCHSGECEPCIALDIKYCPCGKRTLTQDELANRTLCTLPIPTCDEICGKPLECGPPESPHICEKKCHEGPCARCELKTKYVCKCGNKSKEIKCNSVTNELTCKRKCNKTMSCGKHRCIVMCCNAPSHECNRFCNGLLNCRQHRCDRICHPGSCAVCVEASFEDLYCRCGNSSIAPPVRCGTRRPLCILPCSREHECDHPATHICHDEEECPPCIYLTEKLCYGGHELRFAIPCHIKNVSCGMPCGYPLPCKRHTCVKPCHPLPCNTGPCNLPCELLKPDCGHPCSKPCHDGPCPQRACKTMVNVSCICGNLTEARLCSDTKVIEYRLNLKTQSMSLLDNIIDSPPTIKSYKILECTTECAKLERNRRIALALQIRNPDLSPNVTPRYSDFMKEFAKKDPPFCNYVHEKLAELVTNAKQSKQNSRSHSFEVMKYEKRKLVHEYCEHFGCESVAYDAEPHRNVVAVALKEKSWLPNYSVVEVLQRENGCPRVNPFASIKNRNTIILNKKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01500023;
90% Identity
-
80% Identity
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