Basic Information

Insect: Tuberolachnus salignus
Gene Symbol: -
Assembly: GCA_956483605.1
Location: OY101432.1:19533395-19537782[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00071 0.077 13.8 4.5 1 23 241 263 241 263 0.97

2 11 1.9e-05 0.0021 18.8 2.5 1 23 269 291 269 291 0.98

3 11 0.00018 0.019 15.7 0.5 1 23 297 320 297 320 0.97

4 11 0.044 4.7 8.2 3.4 1 21 326 346 326 348 0.95

5 11 0.00011 0.012 16.4 1.9 1 23 354 376 354 376 0.99

6 11 0.00015 0.016 16.0 1.4 1 23 382 404 382 404 0.98

7 11 0.00054 0.058 14.2 3.0 1 23 411 434 411 434 0.97

8 11 0.0017 0.18 12.7 2.6 2 23 441 462 440 462 0.94

9 11 0.00016 0.018 15.8 0.8 1 23 468 490 468 490 0.99

10 11 0.00028 0.03 15.1 7.4 1 23 496 519 496 519 0.95

11 11 1.8e-06 0.00019 22.0 5.0 1 23 533 555 533 555 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00071	0.077	13.8	4.5	1	23	241	263	241	263	0.97
2	11	1.9e-05	0.0021	18.8	2.5	1	23	269	291	269	291	0.98
3	11	0.00018	0.019	15.7	0.5	1	23	297	320	297	320	0.97
4	11	0.044	4.7	8.2	3.4	1	21	326	346	326	348	0.95
5	11	0.00011	0.012	16.4	1.9	1	23	354	376	354	376	0.99
6	11	0.00015	0.016	16.0	1.4	1	23	382	404	382	404	0.98
7	11	0.00054	0.058	14.2	3.0	1	23	411	434	411	434	0.97
8	11	0.0017	0.18	12.7	2.6	2	23	441	462	440	462	0.94
9	11	0.00016	0.018	15.8	0.8	1	23	468	490	468	490	0.99
10	11	0.00028	0.03	15.1	7.4	1	23	496	519	496	519	0.95
11	11	1.8e-06	0.00019	22.0	5.0	1	23	533	555	533	555	0.98

Sequence Information

Coding Sequence: ATGTCTGGAAGTAATATGATTTCCAAAGCAACAACTAtagtaatagaTGGACAGCCAGAAAATACAATGACTATTGACGGAACCCATATTAAGATAGAGGATACCTCCTCGGGAACAGAGAATATTACTGATATACAAAATTACTTGGATTCATTTAATAAAGAAATTGAAGGAAATGACGTAACACAAGTAACaactgaAGGTGGTTCAGTAGAACATGCATATTATTTAGATCAAAAtgtccaatattattatcaaacaactACAAATGATGGACAAATGGTTATGGTTGGAgGACTTTCCGAACAAGATGCACAAATGATGGCCGACACAAATGAAAGCAATATAGATAGTGTTACCCAAATAGTTCTTCCTAgtcaagaaaaaattaaaaaagatatgccacaaatTGTTGCTTTGGGTGATGGTGCCTATCAGACAGTTACTCTTGTTCAAGCCGATGCTGATACTAATAATTATGTTCTTTATGTGGTGAAACAACCAAATGATAAAGATGATGAATCTCCTAATGTTACTATGGAAATATCTCAAGATGATCGAGATCCAGATGATCCTGATACTAGTAATGTGTATGATTTCAATGATGGCGAAGACCCAAATCTATCATTGAAATCATGTATTTTAGATTCTGGTGATGAAGATGACAAGTCTATAATTCCTAAATTAATACCTAAAAAATCACAAACAGTAACTCAACAACATATGTGTAACTATTGTAATTATACTACCGGcaaaagatATTTGTTGTCTCGTCATATGAAGTCACATTCAAAAGAACGTCCACATAAATGTACTGTTTGTGAACGTGGTTTTAAAACTCTTACTTCGTTACAAAATCATGTTAACACTCATACGGGGACAAAACCCTATCAATGTCGAAGTTGTCCAAGTGCTTTTACTACATCAGgAGAACTCGTAAGACACGTCCGATATAAACACACTCATGAAAAACCAcataaatgtacaatttgtgATTATGCTAGTGTAGAACTTAGTAAAATGAGAAATCATATGAGATGTCATACTGGTGAACGACCTTaccaatgtccTCATTGTACTTATGCAAGTCCGGATACATTCAAATTAAAACGCCATTTACGTATTCATACAGGAGAAAAACCATACGAATGTGACATTTGCTTTTCTAGATTTACACAGTCCAACAGTTTAAAAACCCATAGACTAATACATAGTGGAGAAAAACCCGTGTTTAAATGTGACCATTGTCCAGCAACTTGTGGTCGAAAAACTGATTTACGTATACATGTACAAAAGCTTCATACTTCAGATAACCCTATTAAGTGCAAACGATGTGGTGAGGCATTTCCTGATCGTTATCAGTTTAagGTACATTGCAAATCACACGAAGgagaaaaatgttataaatgtgAGCTGTGTCCTTATGCTTCCATGTCTCAACGTCATCTTGAAACTCACATGTTAATACACACAGATGAAAAACCATTCCATTGTAAACAATGTGATCAAtcTTTtagacaaaaacaattattacgtcgCCATCATAATTTGTATCATAATCCAACATATATACCGCCTGCACCACACGAAAAAACACACCAATGTAATACATGTCAACGATCTTTTAGACATAAGGGAAATTTATTGAGACATATGGAAGTTCATATGCAACTGTCTACTGGAAATGATCGAAATATAGCAATGAAACAACGATTAGAATATACAGACTCACCCAATGATGATGAATCGGAAGAAGATACAAGTATTCCATCAAGTGATGCCGGAGTTGTAGCAGTAGAAGGTGAAGATGGACACCAATATGTTGTACTTGAAGTAATCCAACTTGACAGTCAAGATCAGTGTGAAAATTACTCATCTAAAAGTATAACAGTACAGCAAACTGGTAATTCTTCACCAAGTCAAAGGGGccttacaattttaaaaacggcaTCATTGATAGATGTTAAAGAAGAATATGATGATGGTGTTGAAAACTGTTTTGGTTTTGATGATGAAGATGATGAAGAAACTACAAATTCGGGTggtaactaa
Protein Sequence: MSGSNMISKATTIVIDGQPENTMTIDGTHIKIEDTSSGTENITDIQNYLDSFNKEIEGNDVTQVTTEGGSVEHAYYLDQNVQYYYQTTTNDGQMVMVGGLSEQDAQMMADTNESNIDSVTQIVLPSQEKIKKDMPQIVALGDGAYQTVTLVQADADTNNYVLYVVKQPNDKDDESPNVTMEISQDDRDPDDPDTSNVYDFNDGEDPNLSLKSCILDSGDEDDKSIIPKLIPKKSQTVTQQHMCNYCNYTTGKRYLLSRHMKSHSKERPHKCTVCERGFKTLTSLQNHVNTHTGTKPYQCRSCPSAFTTSGELVRHVRYKHTHEKPHKCTICDYASVELSKMRNHMRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDICFSRFTQSNSLKTHRLIHSGEKPVFKCDHCPATCGRKTDLRIHVQKLHTSDNPIKCKRCGEAFPDRYQFKVHCKSHEGEKCYKCELCPYASMSQRHLETHMLIHTDEKPFHCKQCDQSFRQKQLLRRHHNLYHNPTYIPPAPHEKTHQCNTCQRSFRHKGNLLRHMEVHMQLSTGNDRNIAMKQRLEYTDSPNDDESEEDTSIPSSDAGVVAVEGEDGHQYVVLEVIQLDSQDQCENYSSKSITVQQTGNSSPSQRGLTILKTASLIDVKEEYDDGVENCFGFDDEDDEETTNSGGN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00184818;
90% Identity: iTF_00340826;
80% Identity: -