Basic Information

Insect: Cinara cedri
Gene Symbol: -
Assembly: GCA_902439185.1
Location: CABPRJ010000975.1:15835-25895[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00082 0.064 13.9 4.5 1 23 237 259 237 259 0.97

2 11 2.2e-05 0.0017 18.8 2.5 1 23 265 287 265 287 0.98

3 11 0.00021 0.016 15.7 0.5 1 23 293 316 293 316 0.97

4 11 0.051 4 8.2 3.4 1 21 322 342 322 344 0.95

5 11 0.00013 0.01 16.4 1.9 1 23 350 372 350 372 0.99

6 11 0.00017 0.014 16.0 1.4 1 23 378 400 378 400 0.98

7 11 0.00062 0.049 14.2 3.0 1 23 407 430 407 430 0.97

8 11 0.092 7.2 7.4 2.4 2 23 437 458 436 458 0.93

9 11 0.00058 0.045 14.3 1.3 1 23 464 486 464 486 0.98

10 11 0.00033 0.026 15.1 7.4 1 23 492 515 492 515 0.95

11 11 2.1e-06 0.00016 22.0 5.0 1 23 529 551 529 551 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00082	0.064	13.9	4.5	1	23	237	259	237	259	0.97
2	11	2.2e-05	0.0017	18.8	2.5	1	23	265	287	265	287	0.98
3	11	0.00021	0.016	15.7	0.5	1	23	293	316	293	316	0.97
4	11	0.051	4	8.2	3.4	1	21	322	342	322	344	0.95
5	11	0.00013	0.01	16.4	1.9	1	23	350	372	350	372	0.99
6	11	0.00017	0.014	16.0	1.4	1	23	378	400	378	400	0.98
7	11	0.00062	0.049	14.2	3.0	1	23	407	430	407	430	0.97
8	11	0.092	7.2	7.4	2.4	2	23	437	458	436	458	0.93
9	11	0.00058	0.045	14.3	1.3	1	23	464	486	464	486	0.98
10	11	0.00033	0.026	15.1	7.4	1	23	492	515	492	515	0.95
11	11	2.1e-06	0.00016	22.0	5.0	1	23	529	551	529	551	0.98

Sequence Information

Coding Sequence: ATGTCTGAAAGTGATGTGATTTCGGAGGGAACAACTATAGTAATAGATGGACAGCCAGAAAATACAATGACTATTGATGGAAACCGTATTAAGATTGAGGATACATCTGCGGGAACTGAAAATATTACCGATATACAAAATTATTTAGATTCATTTAATAAAGAAATTCAAGGAAATGATGTTACACAAGTGACGACTGATGTTGATTCAGTAGAACATGCATATTATATTGATCAAAATGTCCAATATTATTATCAAACAACTACAAATGATGGGCAAATGGTTATGGTTGGAGGACTCTCTGAACAAGATGCACAAATGATGGCTGACAATAATGAAAGTGTTACCCAAATTGTTCTTCCTAGTCAAGAAAAATTAAAAAAAGACATTCCACAAATAGTGGCTTTGGGGGATGGTGGTTATCAAACAGTTACTCTTGTTCAAGCAGACACTGAAGCTAATAATTATGTTCTATATGTGGTGAAACAACCAAATGATAAAGATGATGAATCTCCTAATGTTAGTATGGAAATATCTCAAGATGATCCAGATCCAGATGATCCTGATACTAGTAATGTGTATGATTTCAATGATGGTGAAGATCGAAATCAATCAACAAAATCCAATATTATAGAATCTGGCGATGAAGATGACAAAACTATAATTCCTAAATTAGTACCAAAAAAGTCACAAACTGTTACTCAACAACATATGTGTAATTATTGTAATTATACTACTGGTAAAAGATATTTGCTGTCTCGGCATATGAAGTCTCATTCTAAAGAACGTCCGCATAAATGTACTGTTTGTGAACGTGGTTTCAAAACTCTTACTTCATTACAAAACCATGTTAACACTCATACAGGAACAAAACCTTATCAGTGTAGAAGTTGTCCAAGTGCTTTTACTACTTCAGGTGAACTTGTAAGACACGTTCGATATAAGCACACTCACGAAAAACCGCATAAATGTACTATTTGTGATTATGCTAGTGTAGAACTTAGTAAAATGAGAAATCACATGAGATGTCACACTGGTGAACGACCTTATCAATGCCCTCATTGCACATATGCAAGTCCAGATACATTCAAATTAAAACGCCATTTACGAATTCATACTGGCGAAAAACCATATGAATGTGACATATGCTTTTCTAGATTTACGCAATCCAATAGTTTAAAAACACATAGACTTATACACAGTGGAGAAAAGCCAGTGTTTAAATGTGACCACTGTCCAGCGACTTGTGGACGAAAAACTGATTTACGAATACATGTACAAAAACTTCATACGTCAGATAAACCTATTAAGTGCAAACGATGTGGTGATGCATTTCCTGATCGTTATCAATATAAGGTACATTGTAAATCACATGAAGGAGAGAAATGTTATAAATGTGAGTTGTGTTCTTATGCTTCCATGTCTCAACGGCATCTTGAAACTCATATGTTAATACACACAGATGAAAAACCATTCCACTGTAAACAATGTGATCAATCTTTTAGACAAAAACAATTGTTGCGTCGCCATCACAATTTGTATCATAATCCAGCATACATACCACCAGCACCACATGAAAAAACGCACCAATGTAATACGTGTCAACGATCATTCAGACATAAGGGGAATTTATTGAGACACATGGAAGTTCATATGCAAGAATCAACTGGTAACGACCGAAATACAGCAATGAAACAACGATTAGAATATACAGATTCAGCCAACGAGGATGAATCGGAAGAAGATACAAGTATTCCATCAACTAAATCTGAAGTTGTAACATTAGACAGCGGAGATGGACGACATCAGTATGTTGTACTTGAAGTAATCCAACTTGATGGTCAAGATCAGCGGGAAAATTACACGTCTACAAGTGTAACTGTACAACAAGCTGGTCAATCTACACCAAGTCAAAAGGATCTTACAATTTTAAAAACAGCGTCTTTGACTGTAGTTAAAGAAGAAATTGATGATGGTGTTGAAAACTGTTTTGGTTTTGATGATGAAGATGATGAAACTACAAATTCTGGTGGTTAA
Protein Sequence: MSESDVISEGTTIVIDGQPENTMTIDGNRIKIEDTSAGTENITDIQNYLDSFNKEIQGNDVTQVTTDVDSVEHAYYIDQNVQYYYQTTTNDGQMVMVGGLSEQDAQMMADNNESVTQIVLPSQEKLKKDIPQIVALGDGGYQTVTLVQADTEANNYVLYVVKQPNDKDDESPNVSMEISQDDPDPDDPDTSNVYDFNDGEDRNQSTKSNIIESGDEDDKTIIPKLVPKKSQTVTQQHMCNYCNYTTGKRYLLSRHMKSHSKERPHKCTVCERGFKTLTSLQNHVNTHTGTKPYQCRSCPSAFTTSGELVRHVRYKHTHEKPHKCTICDYASVELSKMRNHMRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDICFSRFTQSNSLKTHRLIHSGEKPVFKCDHCPATCGRKTDLRIHVQKLHTSDKPIKCKRCGDAFPDRYQYKVHCKSHEGEKCYKCELCSYASMSQRHLETHMLIHTDEKPFHCKQCDQSFRQKQLLRRHHNLYHNPAYIPPAPHEKTHQCNTCQRSFRHKGNLLRHMEVHMQESTGNDRNTAMKQRLEYTDSANEDESEEDTSIPSTKSEVVTLDSGDGRHQYVVLEVIQLDGQDQRENYTSTSVTVQQAGQSTPSQKDLTILKTASLTVVKEEIDDGVENCFGFDDEDDETTNSGG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00184818;
90% Identity: iTF_01499829;
80% Identity: -