Tdic010759.1
Basic Information
- Insect
- Trypoxylus dichotomus
- Gene Symbol
- -
- Assembly
- GCA_014905495.1
- Location
- BNES01000038.1:859143-865776[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.26 1.6e+03 -0.3 0.1 25 33 3 11 1 16 0.81 2 5 0.014 90 3.8 0.1 23 54 171 202 167 202 0.90 3 5 0.00066 4.1 8.1 0.0 21 45 225 249 216 255 0.90 4 5 0.0046 29 5.4 0.1 24 44 284 304 273 308 0.84 5 5 0.00011 0.7 10.5 0.1 22 49 310 337 307 341 0.86
Sequence Information
- Coding Sequence
- atgcaaGCTACATGCCCTCAGtgtaataatcttttaaaaacgCCTTCGTGTAGATTAATTCAAGATGCATGTGGACATCAAAAATGCAGATTATGTCTATTAAAAGATGAAGACAAGTGCAGTTTATGTCTTAACACTGAGGAGACTGATCCAGTAGTGCATAACAgtgttataaaatatgaaaataatcatACGGCAGTAATTGCATTTAAGAGTAGCAGTGATGttcctaaaaaagaaaatactactGACATTAAACAACAAGAAAAAACGGAATTGAATAAACGTTTTTATCAAACATTGCCTATTCCAAACCACATAACAGTAAGCAACGATCTTCCTATTCTATATAGTTGCAAAATATGCGGAAGGAATTTTAAAACGAGGTCTCATATAAAATATCATCAGTATTGCGCTACCGGGAAAAAGCCATTGCAATGTGCCTATTGTTCCAAAGAATTTATTGCCAAAGCTCATTTGGAACTTCATATTTTGAATCATACAGGTAGAAAACCATATTCCTGTGATACTTGCGGAAAGTCATTtttacaatatgcaaaattaaaaagGCATATGCTATTACATTCTAATTTAAAGCCTTGTGTCTGTCAGAAATGTGGTAAATCTTTCCGGACCAATGATAAATTGAAAGTCCATTCTTTAATTCATAGTAAGGAAAGACCGTTTGCGTGTAAGAAGTGTAAGGCTAAGTTTAACAATTCGtcaaatttaaagaaacataTGGCTGTCCATATAAAGGAAGGTATTCATATGTGTGATCAATGTGGGAAGAGATTTAAATTGAGATCAACCTTAATGACGCACCGCAAGATTCACTCTAACAATAAATCGCATAAGTGCCCTATTTGTACTAAAGCTTTTCATAACTTAAAAGACTTGAAAAGGCATGCATTGATACATGCAGATGAAAAAGCATTCAACTGTGATATATGCAACACCTCCTTCCGTAGAAAAGATAACTTAAACAGACATTTAAGAAATACGCATCCAGGTAAAAAGGCTAGTTATACGCAGAAAATCGTTAAAGCACCGTTGCCTAAGCCGTCAGTGGTGGAAAGACCAAACGCCATAAAAGTGATTACGCCATCACCTgcttgtaatattaaaaaacaagaaGTTATTGAACGTGACCAAAGAACTGTCCCTGTAATAAACGGTCCAATAAAATTGGCTTCCAAGACGACTGCATTTAAGGACTGCTACAATATTAATAGAAATACATCTGAAACATCTGAAAGCGTCAATATTTACGAGAAAATTCTTTTGCCCAACAATAATATTCCTAAAGTCAGCGAATTACAAACGGCAAGAAAACCGAGTGAAGTATTGAAAAACGATTTCCTACCACTTCATTACGGTACATCGTTCGAACACAAAACCCACGCAGTtatcaaaaacataaaattcaaaCTGCCAAAGGAGTATTTAAATTTGTCCAATAAGGATGATCATCCCAGTGGTGGTGCAATACAAAGCAATAAAGACTCAAAACTCAACGTGGATGCAATAACGAATGTTACAAACAATAATAACGTGAATGCTGAGCCGCATAGTGAAGTTACAAGCGTTATCGTAAATCCAACAAATAATCAAATTTCCGATGTGCACTGGAGGAAAAGGACGACACAAAATTTTAATGCTAGTCATGTAGAAAGtgaattgtaa
- Protein Sequence
- MQATCPQCNNLLKTPSCRLIQDACGHQKCRLCLLKDEDKCSLCLNTEETDPVVHNSVIKYENNHTAVIAFKSSSDVPKKENTTDIKQQEKTELNKRFYQTLPIPNHITVSNDLPILYSCKICGRNFKTRSHIKYHQYCATGKKPLQCAYCSKEFIAKAHLELHILNHTGRKPYSCDTCGKSFLQYAKLKRHMLLHSNLKPCVCQKCGKSFRTNDKLKVHSLIHSKERPFACKKCKAKFNNSSNLKKHMAVHIKEGIHMCDQCGKRFKLRSTLMTHRKIHSNNKSHKCPICTKAFHNLKDLKRHALIHADEKAFNCDICNTSFRRKDNLNRHLRNTHPGKKASYTQKIVKAPLPKPSVVERPNAIKVITPSPACNIKKQEVIERDQRTVPVINGPIKLASKTTAFKDCYNINRNTSETSESVNIYEKILLPNNNIPKVSELQTARKPSEVLKNDFLPLHYGTSFEHKTHAVIKNIKFKLPKEYLNLSNKDDHPSGGAIQSNKDSKLNVDAITNVTNNNNVNAEPHSEVTSVIVNPTNNQISDVHWRKRTTQNFNASHVESEL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00626456;
- 90% Identity
- iTF_01499124;
- 80% Identity
- iTF_01499124;