Basic Information

Insect: Trypoxylus dichotomus
Gene Symbol: ZNF556
Assembly: GCA_014905495.1
Location: BNES01000218.1:176836-181863[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.8e-05 0.0025 18.6 0.7 1 23 139 161 139 161 0.95

2 15 0.0018 0.16 13.0 0.8 3 23 169 189 168 189 0.99

3 15 0.0001 0.009 16.9 0.1 1 23 291 313 291 313 0.98

4 15 0.0036 0.32 12.0 0.1 1 23 319 342 319 342 0.97

5 15 1.4e-05 0.0012 19.6 3.9 1 23 366 388 366 388 0.97

6 15 0.022 1.9 9.5 0.1 1 23 401 423 401 423 0.90

7 15 1.3 1.2e+02 3.9 0.2 1 23 429 452 429 452 0.94

8 15 0.059 5.3 8.2 4.1 3 23 461 481 460 481 0.89

9 15 2.5e-05 0.0022 18.8 3.9 1 23 487 509 487 509 0.98

10 15 0.003 0.27 12.2 0.2 2 23 515 536 514 536 0.96

11 15 4.1e-06 0.00036 21.3 0.5 1 23 544 566 544 566 0.98

12 15 0.00087 0.078 13.9 0.1 3 23 574 594 572 594 0.97

13 15 0.00012 0.011 16.6 0.3 1 23 600 622 600 623 0.95

14 15 0.051 4.5 8.4 1.6 1 23 637 659 637 659 0.96

15 15 0.00043 0.038 14.9 0.1 1 20 987 1006 987 1009 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.8e-05	0.0025	18.6	0.7	1	23	139	161	139	161	0.95
2	15	0.0018	0.16	13.0	0.8	3	23	169	189	168	189	0.99
3	15	0.0001	0.009	16.9	0.1	1	23	291	313	291	313	0.98
4	15	0.0036	0.32	12.0	0.1	1	23	319	342	319	342	0.97
5	15	1.4e-05	0.0012	19.6	3.9	1	23	366	388	366	388	0.97
6	15	0.022	1.9	9.5	0.1	1	23	401	423	401	423	0.90
7	15	1.3	1.2e+02	3.9	0.2	1	23	429	452	429	452	0.94
8	15	0.059	5.3	8.2	4.1	3	23	461	481	460	481	0.89
9	15	2.5e-05	0.0022	18.8	3.9	1	23	487	509	487	509	0.98
10	15	0.003	0.27	12.2	0.2	2	23	515	536	514	536	0.96
11	15	4.1e-06	0.00036	21.3	0.5	1	23	544	566	544	566	0.98
12	15	0.00087	0.078	13.9	0.1	3	23	574	594	572	594	0.97
13	15	0.00012	0.011	16.6	0.3	1	23	600	622	600	623	0.95
14	15	0.051	4.5	8.4	1.6	1	23	637	659	637	659	0.96
15	15	0.00043	0.038	14.9	0.1	1	20	987	1006	987	1009	0.94

Sequence Information

Coding Sequence: ATGGAGGAGGGCTTTACACTATCATGGGAAGACGCCGTCTCAGTTGTACAGGAAGAGGAAGTGATCTGCGGCATTGAAAATGAAACAATCCTCACGACGGACACACCAGAATTTGCAGATGTCTGTGAAGAGGTAGTAGTGCAGGATAATAACGAGAACAATGGAGTCGAGGAGGTCCCAACTGATAATGTTATGTATTTAGCCGACCATAATGTGCTGATCATGCAACAGAATACCAATCCGTTCTTGGATTGTCAGGTTACCGAAGAAGTGGTTGCTGATCAATGGAATGAAAGCTGTCCGGAAATTGTAGTTGGGTCAGAGGAGAATGTTGGAGATATCGATGAACAATCGAATGAAGATGTCGTTATACCTTTACCGTTGGATCAAGATCAATACACGGCAGCTAGGCCGTACCCTTGTGATTTTTGCAGTCGACGGTTTAGGAAAAAGGCGAACCTGATGAATCATATGGTTGCCCATCAAACAGATCGGCCACATGGATGTAATCTATGTGGAGTTCGTTATATAAGAAGATGTGACTTGATCAATCACCTCAAGATCCACGCGTACGTCCCTGAAACCGACAACATGGAGGAAGAAACGCAGGAGGATTCGGATTATGAGAAGCACAAACGTCCGAAACCGTTCCTGAAAAAACGaaagaagaataaaatcaaAGAGGAGTATCCTGACTCGCCGGATGGAAAAGCGGCTTCCAGTTCGAGGTCGTACGATTACGTCGACGAAGATATGCGACTGATGGAAGCGATGGAGAGCTCGGTGAAGGCGGATTACGCGGATTACCTGCCGCAAGAGAATCACCCCGTGTTGGAACCGCGTTATCCGATCACCGATCCCCGCAAGCCCTTCGTCTGTCAGCATTGCGGTGTGGGATTCGCCCGCGAGAAGGCGCTCGCGTCGCACGCTAGGGTGCACGCCGGGGACTCCCCGTTCGAATGTCAGAAGTGCGGGGAGATGTTCTGGGACGCGGCGCTGATGCGCGAGCACATCCGCAACAAGCACGGCGATATGGAGGACGATTTCGAGGACGACGACGAGGAGTACAGCGAAGAGGAGGGTAAATACGGAGAGTTCTTCTGTCAGACCTGCGGTCTGACGTTCCATCGGCAGGATCTACTGAAGAGACACCAGCGCATCCACGTTAAAGAAGAGTACGTCACCGAAGCGGAATACAATCACGTCTGTAAGATATGCGGGGAGTCGTTTCAGGAGGCGTTGGATATGCTGGCGCACGCCGAGGTGCACGCTAGGGGTTCGGAGCATCGATGCATGGCGTGCGGTGAGGTTTGCGCTGACGAACAGGCGGTCGCCGTTCACGTGCAGTCTAAGCACGGTAAGAATCTACCGCCGAATTCGTGCTTGCAGTGTGGAAGAACGTGTAAGGACAAGAGAACCTTATTGAAGCACTCGTTCGAGCATACGAAGGAGAAGGTATTCTCCTGCTCGAAATGTCCAAAGACCTTCCACAACAACGCGCGATTAAAACGTCACATGCTCTCGCACAGAAATAAAGTAGTGGTGTGCGACGTTTGCGGCGAGGAATTTCCCGACGGACGTTCGCTGATGAATCACAGGCACAGCCATAGTAGCGTTTCCGGCCGGCAATTCCCCTGCAAAGAGTGCGGGAAAACGTTCGGCTCGAGGAGTTCGCAGCAGATCCACCTGAGAATCCATACCGGCGAAAGACCGTACGGCTGTAGGTACTGCTGGAAGGCGTTCGCCGACGGCGGTACGTTGCGCAAGCACGAAAGGATACACACCGGGGAGAAACCGTACGCATGCGCGGTTTGTCCGCGTGCCTTCAATCAGCGGGTCGTCCTCAGGGAGCACATCCGTTCGCACCATTCGGGCCCCGATCCCAATTACACGCATAGCATGACGCCGTTCTGCTGCTCGGTGTGTTCGGACATGTTCGCGACCTCGCAAGATCTGATCGTCCACCTCATCCATCACTGCGATCTGAACACGGCGATGCGAAGGCAGCCTCAGGTCGGGCCGAGGAAGTACAAGCGAAGGCGCAAGCTGAAACCGCACGAGCTCGAGATCATCTCGCACATGGAGGAGGTCGAAGAGGACGAGAACGACGAGGAGGACGAGTACACCGATACGGAGGACGAGAACGATATAAGACGCAATAAGGCGCCCGCTAAGAAGAAGAAACAACCGAAGCAGTCTCCGAAGCCCGCCGCGAACGTTACTGGTTTCGCCGATATGTACAATAGCTTCTCGACGGCGATCGAGAATATCGGGTCGATTGTGAAGAGCAACAGCTCGAAGAACAAGAAGAAGGTCAAACAGGAGCACGTCGTTCCGTCAAGGCCTAAGATGATACACACGCAAAAGACGAAGGTGGCGGTGGAAACGACGGAAGGTGGCCGAGTCCGACATAAGACGAAGACTCTAGTCACGCGGACGCAGCCGATGGAATTGAAGACGACCGCGATGACATCCAACGAGAGGGTTCGACCTCGCACGAAAAACGTCAGCTACCACATACTAAATCCGGAAAAGCACCCTCTGGCGACCTTCCCCGATGACGATACGACGCAAGCCGTCAACAACCTGTTAGCGAGCGAAACGCAAGGCCAGCACGAGACCAACGGTCTCGACCATCACGCGAGCGTCGAGAATAACGCCTGCGAGCCGGAGCGGAAAGGCGCGAGGCCGTCGATCTTGAGGAAGGGGAACAACAGCCTCGAACCCGGCCGTCTAATCATAGGTCCCGGTACGAAGGTCGTCCGGATAGTGAAGAGCGGCATGATCGTGTCGAAGAACAGGCGACGCGGCGCGCCGGCGCCGGAACCGCCCGAACCGGAACCCGAACACATCCTGCCGAACATTGAGGAGCCGCCGATCCACATCAAACAGGAGGTGATCGACGCGAGTCCGCTACACGAACTGGCCGAGATCTCGATGCAGCATGCGCAGAGCCTGTTCAAGTGTGAGATGTGCAGTGAAGTGTTTACCGATAGGGCACAGTTACTGGTACACGTACCGATTCACATTTGA
Protein Sequence: MEEGFTLSWEDAVSVVQEEEVICGIENETILTTDTPEFADVCEEVVVQDNNENNGVEEVPTDNVMYLADHNVLIMQQNTNPFLDCQVTEEVVADQWNESCPEIVVGSEENVGDIDEQSNEDVVIPLPLDQDQYTAARPYPCDFCSRRFRKKANLMNHMVAHQTDRPHGCNLCGVRYIRRCDLINHLKIHAYVPETDNMEEETQEDSDYEKHKRPKPFLKKRKKNKIKEEYPDSPDGKAASSSRSYDYVDEDMRLMEAMESSVKADYADYLPQENHPVLEPRYPITDPRKPFVCQHCGVGFAREKALASHARVHAGDSPFECQKCGEMFWDAALMREHIRNKHGDMEDDFEDDDEEYSEEEGKYGEFFCQTCGLTFHRQDLLKRHQRIHVKEEYVTEAEYNHVCKICGESFQEALDMLAHAEVHARGSEHRCMACGEVCADEQAVAVHVQSKHGKNLPPNSCLQCGRTCKDKRTLLKHSFEHTKEKVFSCSKCPKTFHNNARLKRHMLSHRNKVVVCDVCGEEFPDGRSLMNHRHSHSSVSGRQFPCKECGKTFGSRSSQQIHLRIHTGERPYGCRYCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPNYTHSMTPFCCSVCSDMFATSQDLIVHLIHHCDLNTAMRRQPQVGPRKYKRRRKLKPHELEIISHMEEVEEDENDEEDEYTDTEDENDIRRNKAPAKKKKQPKQSPKPAANVTGFADMYNSFSTAIENIGSIVKSNSSKNKKKVKQEHVVPSRPKMIHTQKTKVAVETTEGGRVRHKTKTLVTRTQPMELKTTAMTSNERVRPRTKNVSYHILNPEKHPLATFPDDDTTQAVNNLLASETQGQHETNGLDHHASVENNACEPERKGARPSILRKGNNSLEPGRLIIGPGTKVVRIVKSGMIVSKNRRRGAPAPEPPEPEPEHILPNIEEPPIHIKQEVIDASPLHELAEISMQHAQSLFKCEMCSEVFTDRAQLLVHVPIHI*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00990038;
90% Identity: iTF_00956483; iTF_00627527; iTF_01121031; iTF_01253002;
80% Identity: -