Basic Information

Insect: Popillia japonica
Gene Symbol: ZNF556
Assembly: GCA_004785975.1
Location: SMLS01047963.1:2136-5111[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2e-05 0.003 18.7 0.7 1 23 139 161 139 161 0.95

2 15 0.00079 0.12 13.7 0.9 3 23 169 189 168 189 0.99

3 15 7.3e-05 0.011 16.9 0.1 1 23 291 313 291 313 0.98

4 15 0.0026 0.39 12.0 0.1 1 23 319 342 319 342 0.97

5 15 1.1e-05 0.0016 19.6 2.9 1 23 366 388 366 388 0.97

6 15 0.016 2.4 9.6 0.1 1 23 401 423 401 423 0.90

7 15 0.12 19 6.7 0.7 1 23 429 452 429 452 0.96

8 15 0.04 6 8.3 4.3 3 23 461 481 460 481 0.89

9 15 5.6e-05 0.0084 17.3 4.1 1 23 487 509 487 509 0.95

10 15 0.0022 0.33 12.3 0.2 2 23 515 536 514 536 0.96

11 15 3e-06 0.00045 21.3 0.5 1 23 544 566 544 566 0.98

12 15 0.00063 0.095 14.0 0.1 3 23 574 594 572 594 0.97

13 15 9e-05 0.013 16.6 0.3 1 23 600 622 600 623 0.95

14 15 0.037 5.5 8.4 1.6 1 23 637 659 637 659 0.96

15 15 0.00045 0.068 14.4 0.1 1 20 968 987 968 990 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2e-05	0.003	18.7	0.7	1	23	139	161	139	161	0.95
2	15	0.00079	0.12	13.7	0.9	3	23	169	189	168	189	0.99
3	15	7.3e-05	0.011	16.9	0.1	1	23	291	313	291	313	0.98
4	15	0.0026	0.39	12.0	0.1	1	23	319	342	319	342	0.97
5	15	1.1e-05	0.0016	19.6	2.9	1	23	366	388	366	388	0.97
6	15	0.016	2.4	9.6	0.1	1	23	401	423	401	423	0.90
7	15	0.12	19	6.7	0.7	1	23	429	452	429	452	0.96
8	15	0.04	6	8.3	4.3	3	23	461	481	460	481	0.89
9	15	5.6e-05	0.0084	17.3	4.1	1	23	487	509	487	509	0.95
10	15	0.0022	0.33	12.3	0.2	2	23	515	536	514	536	0.96
11	15	3e-06	0.00045	21.3	0.5	1	23	544	566	544	566	0.98
12	15	0.00063	0.095	14.0	0.1	3	23	574	594	572	594	0.97
13	15	9e-05	0.013	16.6	0.3	1	23	600	622	600	623	0.95
14	15	0.037	5.5	8.4	1.6	1	23	637	659	637	659	0.96
15	15	0.00045	0.068	14.4	0.1	1	20	968	987	968	990	0.93

Sequence Information

Coding Sequence: ATGGAGGAAGGATTCACTCTAGCTTGGGAAGACGCCGTCTCAGTCGTACAGGAGGAGGAAGTCATTTGCGGCATAGAAAACGAAACAATCCTCACAACAGACACACCAGAATTCGCAGACGTCTGCGAAGAAGTCGTAGTGCAAGACAACAACGAGAACAATGAAGTCGAAGAGATCCCTACAGACAACGTCATGTACCTATCCGATCACAACGTTCTCATCATGCAGCCGAATAGCGGCCCTTTCATGGACTGCCAAGTTTCCGAAGAGGTAGTCGCTGATCAGTGGAACGAGAGTTGCCCAGAAATCATCGTCGGGTCTGAAGAGAATGTCGGTGACATCGACGAGCAGTCAAACGAAGACGTTGTTATCCCTCTACCATTAGATCAAGATCAATACACCGCAGCTAGGCCATATCCGTGCGATTTCTGCAGTCGACGGTTCAGAAAGAAGGCGAATCTGATGAATCACATGGTCGCGCATCAAACTGACCGACCCCACGGCTGCAATTTGTGCGGTGTCCGCTATATTCGAAAGTGCGATTTAATTAACCACCTCAAAATACATGCTTACGTCCCCGAGACGGATAATATCGAGGAAGAAACACAGGAAGAATCCGATTATGAGAAACACAAACGTGCTAAACCTTTTCTAAAGAAACGTAGAAAGAATAAGATTAAAGAGGAGTTCCCCGATTCACCCGATGGGAAACCAGCCTCGAGTTCGAGGTCCTACGATTATGTCGATGAGGATATGCGTTTAATGGAAGCTATGGAAAGCTCGGTTAAAGCCGATTATGCAGATTACCTCCCGCAGGAGAATCATCCCGTCACAGAACCACGATATCCAATTACAGATCCGCGCAAGCCTTTCGTTTGCCAGCACTGCGGTGTGGGATTTGCTCGCGAGAAAGCTCTAGCATCCCATGCGAGAGTCCACGCAGGTGACTCACCGTTCGAGTGCCAGAAATGTGGTGAGATGTTCTGGGATGCTGCGTTGATGAGGGAACACATTAGAAATAAGCACGGGGATATGGAGGATGATTTCGAAGATGATGACGAGGAGTATAGCGAGGAGGAGGGAAAATATGGGGAATTTTTCTGTCAAACGTGTGGGTTAGCTTTCCATCGGCAGGATTTATTGAAACGTCACCAGAGGATTCATGTTAAAGAGGAGTACGTGACAGAATCCGAATACAACCATGTGTGTAAGATATGCGGGGAATCATTTCAGGAAGCTTTAGATATGTTAGCCCACGCAGAGGTGCACGCTAGGGGTTCTGAGCACCGTTGCATGGCTTGCGGTGAGGTTTGCAGCGACGAGCAATCGGTTGCTGTCCACGTACAGACTAAACACGGAAAGAATTTACCTCCGAACTCTTGCATGCAGTGCGGAAGGACTTGCAAGGATAAGAAAACTTTGTTGAAGCATTCTTTTGAGCACACTAAAGAGAAGGTCTTCTTGTGTTCGAAGTGTCCGAAGACTTTTCATAATAAAGCTAGATTAAAGCGGCATATGTTGTCGCACAGGAATAAGGTGGTGGTTTGCGATGTGTGCGGGGAAGAATTCCCGGATGGGCGCTCCTTAATGAACCACAGGCACAGTCACAGTTCTGTTTCGGGGAGGCAATTCCCCTGTAAGGAGTGCGGGAAGACTTTCGGATCAAGGAGTTCGCAGCAGATCCATCTCCGCATACATACAGGGGAGAGACCGTATGGGTGTAGATATTGTTGGAAGGCCTTCGCTGATGGGGGGACGTTGAGGAAACACGAGCGCATCCACACGGGGGAGAAACCCTACGCTTGCGCCGTCTGTCCTAGAGCGTTCAATCAAAGGGTGGTGTTAAGGGAGCACATCCGGTCGCACCATTCCGGACCGGATCCGAATTACACGCACAGCATGACCCCCTTTTGCTGCTCGGTGTGTTCGGATATGTTCGCCACATCGCAGGATTTAATCGTCCACCTGATACACCACTGCGACTTGAACACAGCGATGAGGAGGCAGCCGCAGGTTGGGCCGCGGAAATACAAGAGGAGACGCAAGTTGAAGCAGCACGAATTAGAGCTAATCTCGCACATCGAGGAGGTGGAGGAGGAGGAGAATGAGGATGAGGAGGATTACACTGACACAGATAATGAAAATGATCGACGAAGTAAAGCTAAAACGAAGAAGAAACCGGCGAAACAATCGCCGAAACAACCTCCCAACGTTAGCGGCTTCACCGATATGTACAACAGCTTCTCCTCGGCGATCGAGAACATCAGCTCGATCGTTAAAAGCAGCACTAAAACGAAGAAAAAAGTGAAACAGGAACACATCGTTCCATCCCGGCCCAAAATGATTCACACGCAGAAAACGAAGGTGGCCGTGGAAACAACCGAAGGCGGTCGCGTCAGGCATAAGACGAAAACTCTAGTGACGCGGACGCAACCCATGGAATTGAAATCGAGTAGCAACGAAAGGGTGCGGCCGCGCACGAAGAACGTCAGCTACCACATACTAAACCCGGAAAAATTACCCCTAGCGACCTTCCCCGACGACGACACGACGCAAGCCGTCAACAATCTGTTAGCGAGCGAACAGCACGAGAGCAACGGCATCGATCACGGTTTCGGCGAATCGAACAGCGTCGAGGACATAAAACCGATCCTGAAGAAGGGGAATAACAGTTTGGAGCCGGGCAGGTTGATAATCGGACCCGGCACGAAGGTCGTGCGGATAGTCAAGAGCGGGATGATCGTTTCGAAGAATAAGAGGAGGGATGAGGTCGAGGAGGTGGAAGCCGAACCGGAACAGATCATCCCCGACATCGAGGAGGTGCACATAAAACAGGAAGTGATCGATCCGAGTCCCTTACACGAACTGGCGGAGATATCGATGCAGCACGCGCAGAGTATTTTCAGGTGCGAGATGTGCAGTGAGGTGTTCACGGATCGAGCACAGTTGTTGGTGCACGTACCGATTCATATTTGA
Protein Sequence: MEEGFTLAWEDAVSVVQEEEVICGIENETILTTDTPEFADVCEEVVVQDNNENNEVEEIPTDNVMYLSDHNVLIMQPNSGPFMDCQVSEEVVADQWNESCPEIIVGSEENVGDIDEQSNEDVVIPLPLDQDQYTAARPYPCDFCSRRFRKKANLMNHMVAHQTDRPHGCNLCGVRYIRKCDLINHLKIHAYVPETDNIEEETQEESDYEKHKRAKPFLKKRRKNKIKEEFPDSPDGKPASSSRSYDYVDEDMRLMEAMESSVKADYADYLPQENHPVTEPRYPITDPRKPFVCQHCGVGFAREKALASHARVHAGDSPFECQKCGEMFWDAALMREHIRNKHGDMEDDFEDDDEEYSEEEGKYGEFFCQTCGLAFHRQDLLKRHQRIHVKEEYVTESEYNHVCKICGESFQEALDMLAHAEVHARGSEHRCMACGEVCSDEQSVAVHVQTKHGKNLPPNSCMQCGRTCKDKKTLLKHSFEHTKEKVFLCSKCPKTFHNKARLKRHMLSHRNKVVVCDVCGEEFPDGRSLMNHRHSHSSVSGRQFPCKECGKTFGSRSSQQIHLRIHTGERPYGCRYCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPNYTHSMTPFCCSVCSDMFATSQDLIVHLIHHCDLNTAMRRQPQVGPRKYKRRRKLKQHELELISHIEEVEEEENEDEEDYTDTDNENDRRSKAKTKKKPAKQSPKQPPNVSGFTDMYNSFSSAIENISSIVKSSTKTKKKVKQEHIVPSRPKMIHTQKTKVAVETTEGGRVRHKTKTLVTRTQPMELKSSSNERVRPRTKNVSYHILNPEKLPLATFPDDDTTQAVNNLLASEQHESNGIDHGFGESNSVEDIKPILKKGNNSLEPGRLIIGPGTKVVRIVKSGMIVSKNKRRDEVEEVEAEPEQIIPDIEEVHIKQEVIDPSPLHELAEISMQHAQSIFRCEMCSEVFTDRAQLLVHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00990038;
90% Identity: iTF_01499067;
80% Identity: -