Tdic013941.1
Basic Information
- Insect
- Trypoxylus dichotomus
- Gene Symbol
- bab1
- Assembly
- GCA_014905495.1
- Location
- BNES01000053.1:14208096-14214014[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.6e-15 5.5e-12 45.7 0.1 3 45 370 412 368 412 0.92
Sequence Information
- Coding Sequence
- ATGGGAAGCACGTCCCAGCAATACTGCTTACGTTGGAACAATCACCGCTCAAACCTTCTGACAGTATTCGACGAACTGCTTCAGAACGAAGCATTCACCGACGTGACCCTAGTCTGTGATGGCGGTAGCCCCATAAAGTGCCATAGGATGGTCCTAGCCGCGTGCTCGCCCTACTTCCAGAACCTGTTCACCGATCTACCCTGCAAACATCCCGTCGTCGTCCTAAAAGACGTAAAATACTCCGAAATCAAAGCGATCTTGGAGTATATGTACAGGGGGGAAGTGAACGTTGCCCAAGATCAACTCGCCGCCCTGCTGAAGGTAGCCGAAGCGTTGAAAGTTAAAGGTTTAGTCGAGGAAAACCGAAGCGGGGAGCATACCGGGTTAAATCCGCGAGAAGACGAGCCCATGGAACATTCACCACCCGGAATCGCACCGTCCACAACAAATACGTCCTCTGCAGTCcatagtagtagtaataataacaataactccCCGCCACATTCGACGAACGGCGTGAATTTTACGAAAAATCCCTACAATCTATACGGAAAAGCTCCTAGTATAGAGAGGAATTCAAGGATTAACATGCCGTTGTGGGCGGTGCCTGGTATACCTTTACCGCACCATCCTTCCCCCGTGCCTTCACAAAACCATCCGAACGCGGCGGCTACGGCCGCTGCGGTTATGTTGAGCAGTTGCTATGAAGCGGCTGGTTCCGATATGTCACCCCTGAAGAGGAAAAAGTTATCCAGCTTGCTGATGAATCGGGATACGCCGATTTTGAGGACGGTACTGGGACAAGGACAGGCAGATTCGTCGCAACCAGTCAGCTTAGTGTGTCATCCCGATAACCATGAAAGTATGTCGAATAGTATACCGGATGATCGTGTAGAAAGGCATCTAAAAAACGAACCTAGCGAGGATGCCCAATCCCCATACACGGATTTAACCGTCATGGACGAAGACGAAAAGCCCAAGATGGGTGTTCCCTCGTCTTCGCCCCAATCGTACTCCACTGACATGAGGAGCATCTCCTCCGGAATTGCCACCTACGTCCCGACGACGCAGAAACCAGAATGGAAACGCTACAAGCAGTATACTCGAAACGATATAATGTCGGCTATCGAGGCGGTGCGGAACGGCATGTCGGCACTGCAAGCCGCCCGAAAGTACGGCGTACCGTCGCGCACCCTCTACGACAAAGTAAAAAAACTGGGCATCACGACTAGCCGGCCTTTTAAACGAGGTTCTAACGGCAGTTCGGCGTGTTTCCCGTACGGCATAAGCGGGACGAGCTCGCCTTACGATAACGACGAGCATAGCATGAACAATAATTCGGCCCTATTGGAAGCTAGCAGTTTTCTTCAACACGCTCTAGATGGTCGTGGTGGAGACGAGCGGGAGGCTTTAGCGGCGATGGCGGCGGCCGCAGCGGCACACGCGGCGGCCACGGGTCACTCGACGAGTCCCACGAACCACGGCATGCCGAGATCGCCGAGCCCAAATCCGAGCTTGATCAAATACATGCGCCAGAATAGCTTAACCCCGTCTCCGGCGCCCGGTAGCGAACACCACCATAGCGAGACGAACGGTAGTTCGGAACGCGATCGGGAAGACGAGGACGACCACGTGGAAGACTTGTCGATAAGTCGGAAGCAGGAGTCCCGAGTGATAATGCCGCCTATGAACCAGGTATCCACGATCATCAAGAAAGAGGATATCATGAAGGACGCCTTCAAGGATGATATAAGACGCGAGGTAAGCGTAGATGACGCCGAGTAG
- Protein Sequence
- MGSTSQQYCLRWNNHRSNLLTVFDELLQNEAFTDVTLVCDGGSPIKCHRMVLAACSPYFQNLFTDLPCKHPVVVLKDVKYSEIKAILEYMYRGEVNVAQDQLAALLKVAEALKVKGLVEENRSGEHTGLNPREDEPMEHSPPGIAPSTTNTSSAVHSSSNNNNNSPPHSTNGVNFTKNPYNLYGKAPSIERNSRINMPLWAVPGIPLPHHPSPVPSQNHPNAAATAAAVMLSSCYEAAGSDMSPLKRKKLSSLLMNRDTPILRTVLGQGQADSSQPVSLVCHPDNHESMSNSIPDDRVERHLKNEPSEDAQSPYTDLTVMDEDEKPKMGVPSSSPQSYSTDMRSISSGIATYVPTTQKPEWKRYKQYTRNDIMSAIEAVRNGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGSNGSSACFPYGISGTSSPYDNDEHSMNNNSALLEASSFLQHALDGRGGDEREALAAMAAAAAAHAAATGHSTSPTNHGMPRSPSPNPSLIKYMRQNSLTPSPAPGSEHHHSETNGSSERDREDEDDHVEDLSISRKQESRVIMPPMNQVSTIIKKEDIMKDAFKDDIRREVSVDDAE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00466503;
- 90% Identity
- iTF_01498986; iTF_00070210; iTF_00626981; iTF_00956229; iTF_00956402; iTF_00987669; iTF_00627351; iTF_00989271; iTF_01120791; iTF_00065113; iTF_01120958; iTF_00434254; iTF_00433965; iTF_01252943; iTF_01252622; iTF_01123604; iTF_01123842; iTF_00308119; iTF_00307497;
- 80% Identity
- iTF_01498986;