Pjap030402.1
Basic Information
- Insect
- Popillia japonica
- Gene Symbol
- bab1
- Assembly
- GCA_004785975.1
- Location
- SMLS01039354.1:1936-5012[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.3e-14 1.1e-11 45.1 0.1 3 45 370 412 368 412 0.94
Sequence Information
- Coding Sequence
- ATGGGAAGCGCGGCCCAGCAATATTGCTTACGTTGGAACAATCACCGCTCAAACCTTTTGACAGTATTCGACGAACTGCTCCAAAACGAAGCGTTTACCGACGTAACCCTAGTCTGTGATGGCGGTAGTCCCATAAAGTGCCATAGAATGGTTCTAGCCGCGTGTTCGCcctatttccaaaatttatttacCGACTTACCATGTAAGCATCCGGTTGTGGTACTGAAAGATGTCAAATATTCCGAGATCAAAGCAATATTGGAATATATGTACCGAGGAGAAGTCAATGTTGCTCAAGATCAACTCGCTGCTCTATTAAAGGTAGCGGAAGCCTTAAAAGTTAAGGGGCTAGTTGAAGAGAATCGAGGTGGCGAACATCACGGTTTAAACCCCCGCGACGATGAACCGATGGAACATTCTCCGTCGGGAATGACGCCGTCCACGACGAATACGCCTTCTGCAGTCCATAGtagtagcaataataataacaataattcgcCGCCGCATTCGACGAATGGTGTTAACTTTACGAAAAACCCGTATAATCTTTACGGTAAAGCTCCTAGTATAGAACGAAATTCTAGAATTAATATGCCAATGTGGGCAGTACCCGGTATTCCTCTGCCACATCATCCTTCACCCGTGCCTTCACAGAATCATCCCAATGCAGCGGCTACGGCTGCCGCTGTCATGTTGAGCAGTTGTTATGAAGCTGCTGGGTCCGATATGTCACCATTGAAAAGGAAAAAGCTCTCCAGCTTACTAATGAATCGAGATACGCCTATATTGAGGACTGTCCTTGGTCAAGGACAAGCGGATTCCTCGCAACCTGTTAGTTTAGTGTGTCATCCGGATAACCACGAAAATATGTCGAATAGTATTCCTGAAGATCGCGTCGAAAGGCATCTAAAAAACGAACCCAGCGAAGACGCCCAATCACCGTACACGGACCTAACGGTCATGGATGAGGAGGAGAAACCCAAGATGGGGGTCCCTTCATCGTCTCCCCAATCATACGGCACAGATATGAGGAGTATTTCTTCGGGTATAGCCACTTATGTTCCGACGCAAAAACCCGAATGGAAACGTTATAAACAGTACAGTCGCAATGATATCATATCCGCTATAGATGCCGTGAGGAACGGCATGTCAGCCCTTCAAGCAGCCCGAAAGTATGGTGTACCATCGCGCACTCTCTACGATAAGGTTAAAAAGTTAGGTATAACCACAAGTAGACCATTTAAGCGCGGCTCTAATGGAAGTTCGGCTTGTTTCGCCTACGGGATAAGTGGAACTAGCTCGCCGTATGATCAAGACGAGCATAGTATGAACAATAATTCTGCTTTGCTAGAAGCCAGTACTTTTCTCCAACACGCATTGGATGGTCGCGGTGGCGACGAAAGAGATGCCTTAGCGGCTATGGCAGCTGCTGCGGCGGCTCACGCGGCCGCCACAGGACACTCGACAAGTCCCCCGAATCATGGTATGCCGAGATCCCCCAGCCCCAGCCCTAGTTTGATCAAATATATGAGGCAGAACAGCCTGACTCCTTCTCCTGCCCCAGGAAGTGAACATCATCACAGCGAAACGAATGGGAGTTCTGAACGTGATCGAGAAGATGAAGATGATCATGTGGAAGACCTTTCGATAAGTCGAAAGCAGGAGTCTCGCGTTATAATGCCTCCTATGAATCAAGTATCCACCATAATCAAAAAAGAAGACATCATGAAGGATGCCTTTAAAGAAGACATGCGCCGCGAGGTAAGCTTGGATGATactgaataa
- Protein Sequence
- MGSAAQQYCLRWNNHRSNLLTVFDELLQNEAFTDVTLVCDGGSPIKCHRMVLAACSPYFQNLFTDLPCKHPVVVLKDVKYSEIKAILEYMYRGEVNVAQDQLAALLKVAEALKVKGLVEENRGGEHHGLNPRDDEPMEHSPSGMTPSTTNTPSAVHSSSNNNNNNSPPHSTNGVNFTKNPYNLYGKAPSIERNSRINMPMWAVPGIPLPHHPSPVPSQNHPNAAATAAAVMLSSCYEAAGSDMSPLKRKKLSSLLMNRDTPILRTVLGQGQADSSQPVSLVCHPDNHENMSNSIPEDRVERHLKNEPSEDAQSPYTDLTVMDEEEKPKMGVPSSSPQSYGTDMRSISSGIATYVPTQKPEWKRYKQYSRNDIISAIDAVRNGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGSNGSSACFAYGISGTSSPYDQDEHSMNNNSALLEASTFLQHALDGRGGDERDALAAMAAAAAAHAAATGHSTSPPNHGMPRSPSPSPSLIKYMRQNSLTPSPAPGSEHHHSETNGSSERDREDEDDHVEDLSISRKQESRVIMPPMNQVSTIIKKEDIMKDAFKEDMRREVSLDDTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00466503;
- 90% Identity
- iTF_01498802;
- 80% Identity
- iTF_01252943;