Tdic013217.3
Basic Information
- Insect
- Trypoxylus dichotomus
- Gene Symbol
- lov
- Assembly
- GCA_014905495.1
- Location
- BNES01000048.1:6215241-6228206[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.7e-18 3.4e-15 55.9 0.0 1 44 389 432 389 433 0.96
Sequence Information
- Coding Sequence
- atgaGGAAGATGACTCAATCTCACTATTCGTTAAGATGGCACAACCATCAGAGTCATATAACGTCTTCCTTCGACACATTACTCCAAACGGAATCACTTGTAGACGTAACGCTTGTCTGTGAGGAAACGTCGATACGCGCTCACAAAGTTGTTCTGAGTGCTTGTTCACCTTTTTTTCAGCGGATATTTTCGGAAAATCCCTGCAAACATCCGGTTATCGTGCTAAAAGACTTCAGGGATTGGGAAGTTCTAGCGATAATTCAATTTATATACAAAGGGGAAGTTAGTATCGCTAAAGAACAGCTGCAGAACCTCCTAAAAGCCGGGTCGAGCTTGCAAGTAAGGGGATTGGCGCTACCAGATGATTTTGGTATTGACAAGGAATCGCGCCTAATCACAAATCAAACCCCAACACCATCAAATTCGCCTAACGATTATGATAGGAACTTTTATCAAACCGGGCGATTTCCCACGCCTGGAATCACTGTAAGAACTCCGGGAGAAAGGACATCGCCGTTTTCTCCATTACCTATACCAAACTACGAATCGCCGTTGAAATCACCTCATATGTCCCACTTATCGTTTCCTGAGACTTTAATTCCGCGACAAGATTGCCAATCGCCTATTCCGAGACGTAAACAAGCACGACCAAGGCGAAGGTCGGGTGAGCTGTGCGGAGCACAAGACTTGAGCACCAACCCTGCAAATAAAGCTCCATCGCCCATGGAAGAGACTGCGGAGAACCTATGTATGAAGAAACCTAATAAGGAGGATCGCAAAATGAAAGAAATCGAGAGGACAAAGACTCCAGAACCAATGGATAGTCCTGAACTAGATTTGAGTACCCATCATAAGGACTTCACACCATCCCCGCCATTAAGTTTACCGCCGATTTTGAATATGAAACCGGACCTGGAAAGTCATTCACCCCTGCACTTTCCTCCTATGCCGTCTGTTTCAGCTTTGACAATGACCCCACCTCACAttttcgGCCTGGATTCTCCGCTGGGACTTTTTCCGCCTGGTCTTGATGGGTGCAGGAATCCATTACTGGAAATGGCTGATCCGCGAACCACCCCCGAATCGCAACTGTTTGCGAAGAAAAAAATGGGGCGCCCAAAAGGTCAGCATTCAGCACCTCGTGGTGGACCGCCAAGAAGTTGGACAAACGCTGAGCTAACGGAAGCCCTCCAGCACGTCTGGAACAAAAAGATGACAACGAGTCAAGCGTCCCGAATATTCGGCATCCCGTATAATTCCCTACTAATGTATGTTAGGGGAAAATACGGGAAAAGCTTAAAATTGGAGCAGTTGCGGAAAGACTGCATAGGCGCTCCCGGCACTCCAATGGATTTAATGACGATGACCGggaataacaataacaaccCGTGCAAGAACGACAGAGAACCGGATACGATGCAACCCGGCACGAGGCCATCTAGTACGGAAGAAGCGAACGCGCCTCAGCCGATGTTCAATCCATTCGCGCAGAACTTCTACCCGGACTTCGCAGGTTTCCCTATACCGGTTAGCATGTTGCACCTGTTACCACAGAGTGAAAAGAACCGCGATCATTACAGACAGCAGCCTACCATAGAGGACAACTGCAAGAACGACAGAGTCAAGGAGGAGCCGCAGGATCTTTTTATGAGCGCAGCGCTACCTTGTGAGGACCGTCGCGAACTAGTACAACAAAACGGGCAAGACTAG
- Protein Sequence
- MRKMTQSHYSLRWHNHQSHITSSFDTLLQTESLVDVTLVCEETSIRAHKVVLSACSPFFQRIFSENPCKHPVIVLKDFRDWEVLAIIQFIYKGEVSIAKEQLQNLLKAGSSLQVRGLALPDDFGIDKESRLITNQTPTPSNSPNDYDRNFYQTGRFPTPGITVRTPGERTSPFSPLPIPNYESPLKSPHMSHLSFPETLIPRQDCQSPIPRRKQARPRRRSGELCGAQDLSTNPANKAPSPMEETAENLCMKKPNKEDRKMKEIERTKTPEPMDSPELDLSTHHKDFTPSPPLSLPPILNMKPDLESHSPLHFPPMPSVSALTMTPPHIFGLDSPLGLFPPGLDGCRNPLLEMADPRTTPESQLFAKKKMGRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCIGAPGTPMDLMTMTGNNNNNPCKNDREPDTMQPGTRPSSTEEANAPQPMFNPFAQNFYPDFAGFPIPVSMLHLLPQSEKNRDHYRQQPTIEDNCKNDRVKEEPQDLFMSAALPCEDRRELVQQNGQD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00307493;
- 90% Identity
- iTF_01499007;
- 80% Identity
- iTF_01499007;