Tatt005347.1
Basic Information
- Insect
- Trypoxylon attenuatum
- Gene Symbol
- -
- Assembly
- GCA_963989405.1
- Location
- OZ022489.1:28682482-28685964[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0001 0.0095 16.5 1.0 1 23 103 126 103 126 0.95 2 13 0.0092 0.87 10.3 4.6 2 23 257 279 257 279 0.91 3 13 0.00068 0.064 13.9 1.8 1 23 323 346 323 346 0.96 4 13 5.2 4.9e+02 1.7 7.6 3 23 430 451 429 451 0.95 5 13 1 98 3.8 1.5 1 23 501 524 501 524 0.93 6 13 3e-05 0.0028 18.1 0.2 2 23 574 596 573 596 0.92 7 13 0.0006 0.056 14.0 0.2 3 23 620 641 619 641 0.93 8 13 0.0068 0.64 10.7 3.6 2 23 704 726 703 726 0.96 9 13 0.092 8.6 7.2 4.2 3 23 741 762 739 762 0.92 10 13 0.00023 0.022 15.3 0.1 2 23 807 829 807 829 0.94 11 13 0.043 4 8.2 1.6 1 23 908 930 908 930 0.98 12 13 0.00031 0.029 14.9 1.3 2 23 944 966 943 966 0.96 13 13 0.006 0.56 10.9 0.8 1 23 1042 1065 1042 1065 0.98
Sequence Information
- Coding Sequence
- ATGTCCTCGACGATGACGCACGAGACGACGATATCGGAGTTGACGGAAGCGGAGAGCGACGGCTCGAGCTGCGGGGAACGCGACGCGAGAAAGAGACTTCGCGGGGAGGCTGACACCGGGGGAGCAAAGAAGAGACGGAAACAAACGACACCGGTAAGATTCTCCTCGAGTTTGATAAGCGGCACCAACGAGGAGTCGAACGACGAGGAGgaagacgaggacgaggagaacAGCGAAGGTAAGCTGTCGTCGCGCTCGCCATTGCCAAACCACTCCTCGAGCAAGGATGAAAATCTGAATAACGAGTTCCGTTGCCGATATTGTAATCAATTTTTTGATAGTAAAGACCTCCTCAATGCGCATCTCGAGAATGAGCACGGTTCGTCCGCGAATCTCTTCACCACCCCGTACCTCGAGAGTAGCCCTCCAAATTCCGTTGTTAAGATCGAGCCCTTGCAAGCGATAGACCAATCGGAAAATCCGGTTAATCTTCTTAGCGTAAAGAATTTCGCAACATCCTGGCTCACGAGcggtcagcagcagcacgcgCAAACAACGCACACGCAGATACAAACGCAGAATGAGGATTCGTGGCCTGGAGCGTCGAGCCAGATCACCACGATGTCGAATCACTTACAAGCCCTCTCCGCATTCCCCGGTGCCCTTGCCCAGTACCTGCCCTTACCAGGATTCCCTCTCAACGACTCGAACCATCCGGTCAGACCGTCTTTGGGACCAGCGCCAGTGAGAATTTTCAATCCGGACGCGTATTGCGACCTTTGCAACAAAGAGTTCTGCAACAAGTACTTCCTAAAGACGCACAAGGCAAACAAGCACGGAATTTACGTAGACTCTCCTGGACCGAGTGGCTCGGAAAGCAGTATGCCCGGGTCTCTTTACGTCAGCAACTTTCCAGCTAGTACCACTGTAAAGCTGGAGCCTCCGGCGACTCCAACGACCCTCAGTTTTGCGTGTGACCTGTGTTCAAAGCGCTTCAAGAACGAGGAATCGGTCCGCAAGCACAAGCAAAAAATGCACAACGAACTGTTGGATCAATCGGATCTTCAGATTGCTGGTTCTCAGAACGAGGAAGACCGAGAAACCCCGCGCAACAGCCCTGGAGCCATGGAAACGCTGTTCAAGCAGGAATTTGGCGTGGAGCAAGAAGACACGAGTTTCATGCCAGCACCTCGTCACTTGTCGCCGCAATCGATTCAGCAAGCACGAGACTCCGGATTCAACGTCGACCGACTGCGACGATTGGGGGTTATAAACCCGGAGGCTTTCTGCGAAATATGTTGCAAAGAATACTGCAACAAGTATTTCTTACGGACCCACAAAATGAAGAGGCATGGAATAGTTATGCAAGAGAACGAAAAGTCACCCGGTAACTCGGGAGTTCCAGTCACTTGGCACCAGGTGCAAACGAGTCCTTTGAATCTGATCGTAACGGAGAATAGTGCCAATTCGGAGACGAGCGAACGTGCGAGTGTCGAGGAATACGAATGCAAGCCATGTGGCCTCAAGTTCCAGACGATCGGCCTTTATCAAGCGCACTGTCGAAAGATGCACGAGGCGAACGAGGAACAGAGGTCACCGAAGCAAGAGTtcgagggagaaggaggacAGGACCCACGGGGAGATTCGATTTCGGAAGATCTGCAGAAGCTGCAGACAATGATCCTACAATTGAACGGTCTCGAGGCAGCGAAAGGATCGAGCTGCAACGTGTGTGGAAAGGAATTCGAGTCGAGATCCGCTTTGCATGTTCACATGGCTGCCGAACACGGTACCGTGACGGAAGAGGCTGTCTCCTCGCCTCGAGGAAAATCACCTAGCAACCCTGGATTTGCATTTTGCACCTTGTGCGAGAAGGATTATCCGAGTCAAGACTCTCTTCGCAGACACATCGCCGAAGAGCATCAGCCTACAGTTGGGAGCACGGCTCCGACGCCGCACGTACCCGTTCCAAGTGCCGTCGTTGCCACGGGTGCCGTCGGTTCCGCCGTATCAACGACTTCTACCACCCCGACCACCACCACTAATTCGACTCCGACTAATCAAACTCCGACGGAGAGGAAGGTGGCCTCCGTGACCCCCACGTCGAGCTACTGCGAAATCTGCAACAAGGAACTGTGCAACAAGTACTTCATGAAAACTCACATGCAGCGAATGCACGGCATCGAGATCGAGAACGGCGCCCAGATCGGCGGGGTAATTTGTAACATATGCAACAAGGAGCTCTGCAGCAAATACTTCCTCCGAGTTCATAAGCACAACACTCACGGCATCGTCGACGAGAACACGTCCGCCTCGAGCAAACAGGAAAGTTACGATGCCACCAATTCCGAGGATGCTGCACTGAAGCCTGAGCAACTTGGCGACTTGAGCCATCGGTACTTTACTCACTTTACCGAGGTCTGTCCTATCTGCAGCCGAAGGTTCCGCAGCATAAAGTGGCTGAAAGCCCACCTGATGGGCGACCATGGGAAAGCGGGCATTGACAAATGGCGTGAAATGGAGCAACAGTACCAGGCGTCGCCTAGATCCGCCAATAGATCGGCGGGTGCATCGAAAAACACTCAACAAAGTTCGAACCTAAAGATACCAAATGGTTTCGAAGTCAGCCAGCAAATCAAGTCGACCGATTACGCCGGACTCGGTAACCAAGTGCTGTCCAATCTGTTTGGTTCGTCCTCGGAGGATCAGCAGCTAAAGAACTACCGGTGTTCATATTGCAATTTCACGACGACCGTCTTGCCGTTTCTCTTCCTTCACGAGCGTTCCCACGTAAGCCCCCACGAAAGCATGGAGCCAGACAAATCTCTTCAGTGTCCAATTTGCTCGCAAGCTTTCCATCAGCCGGAGCTGCTCCATCAACATCTACTCACGCGACACCAGTTCCCGGCGTTATTGTCTCAGTTTCCACCACCGATACTCGGTAGCCTCGGCAGATCGGAAATCGAAAAGCCGAGCGAGTCGAGAGATCGATTGGATCAGGAGGGAAAAGATGATCGCACGGGTGCCAGTCCGAAAGTCACTGCCAATCAGAGTATTCACGAGCCTACTGCCAGAAACCAACGCCAAGATGAGACCGCCGTGCAAGTGACTGCCCAAGGAGCGTACAAGTGTGCCCAGTGCGGCTACGCAACGACAAATCTCAATAGGATCAAGAAACACGTGAGGAAGGATCACCGATCGATCGGCGATCCTACCGATAGCGTTATCGCGGAACTCAGCAAGACTCTGAAGGACGTTGCCAATCGGCACAAGGTGCCAGCCTGTTACGCGATGCCACAAGATATGAACTCGAACCCCGACAAAACAATTATGCAGCCGTTCTTAATCGAGGAGCAGGATATCATGCCAGCTGGCGAGGAGTCCAGTTCGGAGAAGCGATTCGCGCCGGCTTTGGTCTATCTGCCAGTAAAATCGCGAATCAGCAGTGCACTGACTGCATCCTTTACCCTCAGTCCCGCTTGA
- Protein Sequence
- MSSTMTHETTISELTEAESDGSSCGERDARKRLRGEADTGGAKKRRKQTTPVRFSSSLISGTNEESNDEEEDEDEENSEGKLSSRSPLPNHSSSKDENLNNEFRCRYCNQFFDSKDLLNAHLENEHGSSANLFTTPYLESSPPNSVVKIEPLQAIDQSENPVNLLSVKNFATSWLTSGQQQHAQTTHTQIQTQNEDSWPGASSQITTMSNHLQALSAFPGALAQYLPLPGFPLNDSNHPVRPSLGPAPVRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDSPGPSGSESSMPGSLYVSNFPASTTVKLEPPATPTTLSFACDLCSKRFKNEESVRKHKQKMHNELLDQSDLQIAGSQNEEDRETPRNSPGAMETLFKQEFGVEQEDTSFMPAPRHLSPQSIQQARDSGFNVDRLRRLGVINPEAFCEICCKEYCNKYFLRTHKMKRHGIVMQENEKSPGNSGVPVTWHQVQTSPLNLIVTENSANSETSERASVEEYECKPCGLKFQTIGLYQAHCRKMHEANEEQRSPKQEFEGEGGQDPRGDSISEDLQKLQTMILQLNGLEAAKGSSCNVCGKEFESRSALHVHMAAEHGTVTEEAVSSPRGKSPSNPGFAFCTLCEKDYPSQDSLRRHIAEEHQPTVGSTAPTPHVPVPSAVVATGAVGSAVSTTSTTPTTTTNSTPTNQTPTERKVASVTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIVDENTSASSKQESYDATNSEDAALKPEQLGDLSHRYFTHFTEVCPICSRRFRSIKWLKAHLMGDHGKAGIDKWREMEQQYQASPRSANRSAGASKNTQQSSNLKIPNGFEVSQQIKSTDYAGLGNQVLSNLFGSSSEDQQLKNYRCSYCNFTTTVLPFLFLHERSHVSPHESMEPDKSLQCPICSQAFHQPELLHQHLLTRHQFPALLSQFPPPILGSLGRSEIEKPSESRDRLDQEGKDDRTGASPKVTANQSIHEPTARNQRQDETAVQVTAQGAYKCAQCGYATTNLNRIKKHVRKDHRSIGDPTDSVIAELSKTLKDVANRHKVPACYAMPQDMNSNPDKTIMQPFLIEEQDIMPAGEESSSEKRFAPALVYLPVKSRISSALTASFTLSPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00633854;
- 90% Identity
- -
- 80% Identity
- -