Ecav007378.1
Basic Information
- Insect
- Ectemnius cavifrons
- Gene Symbol
- -
- Assembly
- GCA_964023945.1
- Location
- OZ030379.1:9448137-9451535[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4e-05 0.0036 17.8 0.9 1 23 103 126 103 126 0.94 2 13 0.0091 0.81 10.3 4.6 2 23 253 275 253 275 0.91 3 13 1.4e-05 0.0012 19.2 2.1 1 23 318 341 318 341 0.96 4 13 5.1 4.6e+02 1.7 7.6 3 23 425 446 424 446 0.95 5 13 0.23 21 5.9 2.1 2 23 496 518 495 518 0.94 6 13 2.5e-05 0.0022 18.4 0.0 2 23 567 589 566 589 0.96 7 13 0.00069 0.062 13.9 0.1 3 23 615 636 614 636 0.93 8 13 0.0067 0.6 10.8 3.6 2 23 681 703 680 703 0.96 9 13 0.09 8.1 7.2 4.2 3 23 718 739 716 739 0.92 10 13 0.00023 0.02 15.4 0.1 2 23 784 806 784 806 0.94 11 13 0.042 3.8 8.3 1.6 1 23 885 907 885 907 0.98 12 13 0.00031 0.028 15.0 1.3 2 23 921 943 920 943 0.96 13 13 0.005 0.45 11.2 0.9 1 23 1014 1037 1014 1037 0.98
Sequence Information
- Coding Sequence
- ATGTCTTCGACGATGACGCACGAGACGGCGACATCGGAGCTGACGGAAGTGGACAGCGATGGCTCGAGCTGCGGGGAGCGCGACATCACGAAGAAACGGCATCACAGCGACGGGGATGGCGGTGGCGGCCAAAAGAAGAGACGGAAGCAAACCACCCCGGTGAGGTTCTCGTCCACCCTGATGACCGGCACAAACGAGGAGTCGAACGAAGAGGATGAGGAAGACGAGGACAGCGAAGGTAAGCTGTCGTCGCGCTCGCCTTTGCCCAGTCATCCCTCGAGCAAAGACGAGAATCTCAATAACGAGTTCCGCTGCCGGTACTGCGGCCAATTCTTCGATACCAAGGAAACCCTGAACGctcatctcgacaacgagcacGGCGCCGCGAATCAGCTCTCCCAATTCGCGCCGAGTAGATCCCCGAGCGCCACCATTAAGATCGAGCCGGCGCAGCAGCTCGACCAGTCTGAGAATCCCGTGAATCTCCTTAGTGTAAAGAACTTCGCAAATTCCTGGCTCGCCGGCGGCCAACAAATGCAATCGCACACGCAGATGCAAGCACAGAACGAGGACTCCTGGCATGGCACTGCCGCCAATCAAATCACTTCGATGTCAAATCATTTGCAAGCCCTGTCCGCGTTCCCCGGTGCCCTCGCCCAATACCTTCCTTTGCCGGGCTTCCCTTTAAACGATTCCAGCCACGCGGTCAGACCCTCTTTAGGACCGACGCCCGTCAGAATATTTAATCCGGACGCGTACTGCGACCTGTGCAACAAGGAGTTCTGCAACAAGTATTTCCTCAAGACGCACAAAGCCAATAAGCACGGGATTTACGTGGATTCGCCGGGTCCAAGCGCCCAGGAGGCCAGTTTACCTGGAGCTCTCTTTCCTACCAATTTCTCTAGCAATCCAGTTAAGCTAGAACCCCCGGCGACTCCGCCCGCACCGAGTTTTGCATGCGATCTTTGCCAGAAGCGCTTTAAGAACGAGGACTCCCTTCGCAAGCACCGACAAAAAATGCACACTGATCTGCTAGATCAGCCGGACGCACAGGTTTGCGGCGTGCAGACCGAAGAGGACAGGGAGACGCCGCGTGACAGTCCTGGAGCCATGGAGGCGTTATTCAAGCAAGAATTCGGCGTGGAGCAAGAAGATACGAGTTTTATGCCGGCTCCTCGTCATCTATCACCACAATCGATGCAGCAAGCTCGTGATTCAGGATTCAATGTCGATCGACTTCGACGTTTGGGAGTTATAAACCCTGAAGCCTTCTGCGAGATCTGCTGTAAAGAATATTGCAACAAGTATTTCCTGCGCACTCACAAGATGAAGCGGCATGGTATCGTCATGCAAGAAAATGAGAAGTCACCGGGTAACACTGGTGGCCCAGTTACTTGGCATCAAGTACAAACAAGCCCATTGAATCTGATCGTCACGGAAAGCAGCGCTGGTTCCGAATCAAATGACCGTACTAGCGAGGAATGCGAGTGCAAACCATGCGGCCTGAAATTCCAAACGGTTGGCCTGTATCAAACACATTACCGCAAGATGCACGAAAGCGAGGAGCAAAAGTCGCCGAAAGCGGAATTCGAAGGAGGTGAAAGCCAGGATCAGAGAGGCGATTCTATCTCGGAGGATTTGCAAAAGCTCCAAACTATGATCTTGCAACTAAATGGCTTGGAACCAGGAAAGAGCTCGAGCTGCGGCGTGTGTGGCAAGGACTACGAGAGCAGATCGGCTTTACAAGCACACATGGCTACGGAACATGGGGCGGCGCCTGTAACAGAAGAAGCAATCTCCCCGCCACAAGGAAAATCGCCCACGAACACGACTATCGCTTTCTGTACACTTTGCGAGAAGGATTATCCGAACCAGGACGCTCTTCGTAGACATATTGCCGAGGAACATCAACCTCCTGTTTCAAACACAGTTGCTCCCGTTTCTAATGTACCTACGACATCCACCGCTTCGCGAATCTCCACCCCAACTAGTCAAACTCCGAGCGAGAGGAAGGTCGCGCCGGTGACACCGACCTCGAGTTACTGTGAGATTTGCAACAAGGAACTGTGCAACAAGTACTTCATGAAGACTCACATGCAGCGGATGCACGGCATCGAGATCGAGAACGGAGCACAGATTGGCGGTGTAATATGTAACATTTGCAACAAGGAACTTTGCAGCAAGTATTTCTTGCGAGTTCACAAGCACAACACTCACGGGATCGTTGATGAGAATACATCCAGCTCCATTAAACAGGAGAGTTACGAGACTGGGAACTCGGAGGATGCTGCTCTCAAGCCGGAGCAACTTGGTGATCTTAGCCATCGATACTTCACCCACTTTACCGAAGTCTGCCCTATCTGCAGTCGCAGGTTCCGTAGTATAAAGTGGCTGAAGGCTCACTTAATGGGCGATCATGGCAAAGCTGGCATTGATAAGTGGCGCGAAATGGAGCAACAGTATCAAGCATCCTCACGATCAGCCAGCCGAATGGCAGGTGCGTCGAGAAACAGCCAACAAGCTTCGAATTTAAAAATACCTAATGGATTCGACGTAAGCCCACAATTCAAAGCAGCGGACTACACCGGATTGGGTAACCAAGTGCTCTCCAATCTTTTCGGCTCGTCTTCCGAGGATCAGCAATTAAAGAATTACCGTTGCTCGTATTGCAACTTTACCACGACCGTGTTGCCGTTCTTATTCCTGCACGAGCGTTCTCACGTGAGTCCCCACGAAAGTGTCGAGTCCGAGAAATCCCTGCAGTGTCCAATTTGCTCGCAAGCCTTCCACCAACCGGAGCTGCTTCATCAGCATCTGCTCACGCGCCATCAGTTCCCGGCTCTGCTCTCCCACTTTCCAACACCGGTCCTCGCCGGCTCCAGAGCAGAGTCCGAAAAATCGATCGAATCAAAGGAACAGGAAGTGAGAGATGATCGCACTGCCAGTAGTCCAAAAGTCACTGCCAATCAAAGCATCCAGGAGACTGTGAGGAATCAGCGTCAAGATGAAAACGCAGTGCAGGTGACCGCTCAAGGGGCGTACAAGTGTGCTCAATGCGGTTACGCCACAACCAATCTAACAAGGATCAAGAAGCACGTGAGGAAGGATCACAGGTCGATCGGTGATCCCACGGACAGTGTGATCGCCGAGCTCAGCAAGACTCTGAAGGACGTGGCGAATAAGCACAAGGTGCCAGCTTGTTACGCGACCCCCCAAGATATGAACTCGAACCCCGACAAAACAATTATGCAGCCGTTCCTAATCGAGGAACACGATATAATGCCAGCTGGCGAGGAGTCCAGTTCGGAGAAGCGCTTCGCCCCGGCTCTCGTCTATCTCCCAGTGAAATCGCGAATCAGCAGTGCACTGACTGCATCCTTCACCCTCAGCCCTGCTTGA
- Protein Sequence
- MSSTMTHETATSELTEVDSDGSSCGERDITKKRHHSDGDGGGGQKKRRKQTTPVRFSSTLMTGTNEESNEEDEEDEDSEGKLSSRSPLPSHPSSKDENLNNEFRCRYCGQFFDTKETLNAHLDNEHGAANQLSQFAPSRSPSATIKIEPAQQLDQSENPVNLLSVKNFANSWLAGGQQMQSHTQMQAQNEDSWHGTAANQITSMSNHLQALSAFPGALAQYLPLPGFPLNDSSHAVRPSLGPTPVRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDSPGPSAQEASLPGALFPTNFSSNPVKLEPPATPPAPSFACDLCQKRFKNEDSLRKHRQKMHTDLLDQPDAQVCGVQTEEDRETPRDSPGAMEALFKQEFGVEQEDTSFMPAPRHLSPQSMQQARDSGFNVDRLRRLGVINPEAFCEICCKEYCNKYFLRTHKMKRHGIVMQENEKSPGNTGGPVTWHQVQTSPLNLIVTESSAGSESNDRTSEECECKPCGLKFQTVGLYQTHYRKMHESEEQKSPKAEFEGGESQDQRGDSISEDLQKLQTMILQLNGLEPGKSSSCGVCGKDYESRSALQAHMATEHGAAPVTEEAISPPQGKSPTNTTIAFCTLCEKDYPNQDALRRHIAEEHQPPVSNTVAPVSNVPTTSTASRISTPTSQTPSERKVAPVTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIVDENTSSSIKQESYETGNSEDAALKPEQLGDLSHRYFTHFTEVCPICSRRFRSIKWLKAHLMGDHGKAGIDKWREMEQQYQASSRSASRMAGASRNSQQASNLKIPNGFDVSPQFKAADYTGLGNQVLSNLFGSSSEDQQLKNYRCSYCNFTTTVLPFLFLHERSHVSPHESVESEKSLQCPICSQAFHQPELLHQHLLTRHQFPALLSHFPTPVLAGSRAESEKSIESKEQEVRDDRTASSPKVTANQSIQETVRNQRQDENAVQVTAQGAYKCAQCGYATTNLTRIKKHVRKDHRSIGDPTDSVIAELSKTLKDVANKHKVPACYATPQDMNSNPDKTIMQPFLIEEHDIMPAGEESSSEKRFAPALVYLPVKSRISSALTASFTLSPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01498427; iTF_00391548;
- 90% Identity
- iTF_00391548;
- 80% Identity
- -