Basic Information

Insect: Tromatobia lineatoria
Gene Symbol: -
Assembly: GCA_949699805.1
Location: OX453042.1:9557747-9561409[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0046 0.59 11.5 2.7 1 21 143 163 143 166 0.95

2 13 0.011 1.5 10.2 4.6 2 23 303 325 303 325 0.91

3 13 3.4e-05 0.0044 18.2 1.1 2 23 380 402 379 402 0.95

4 13 6.4 8.3e+02 1.6 7.6 3 23 489 510 488 510 0.95

5 13 0.34 43 5.6 0.2 1 23 560 583 560 583 0.95

6 13 0.00029 0.037 15.3 0.6 1 23 630 653 630 653 0.97

7 13 0.0042 0.54 11.6 0.3 3 23 678 699 676 699 0.93

8 13 0.0084 1.1 10.7 3.6 2 23 764 786 763 786 0.96

9 13 0.016 2.1 9.8 2.4 3 23 801 822 799 822 0.94

10 13 0.00044 0.056 14.7 0.1 2 23 867 889 867 889 0.93

11 13 0.14 18 6.8 1.6 1 23 969 991 969 991 0.98

12 13 0.00013 0.017 16.3 2.5 2 23 1006 1027 1005 1028 0.95

13 13 0.066 8.5 7.8 1.2 1 23 1102 1125 1102 1125 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0046	0.59	11.5	2.7	1	21	143	163	143	166	0.95
2	13	0.011	1.5	10.2	4.6	2	23	303	325	303	325	0.91
3	13	3.4e-05	0.0044	18.2	1.1	2	23	380	402	379	402	0.95
4	13	6.4	8.3e+02	1.6	7.6	3	23	489	510	488	510	0.95
5	13	0.34	43	5.6	0.2	1	23	560	583	560	583	0.95
6	13	0.00029	0.037	15.3	0.6	1	23	630	653	630	653	0.97
7	13	0.0042	0.54	11.6	0.3	3	23	678	699	676	699	0.93
8	13	0.0084	1.1	10.7	3.6	2	23	764	786	763	786	0.96
9	13	0.016	2.1	9.8	2.4	3	23	801	822	799	822	0.94
10	13	0.00044	0.056	14.7	0.1	2	23	867	889	867	889	0.93
11	13	0.14	18	6.8	1.6	1	23	969	991	969	991	0.98
12	13	0.00013	0.017	16.3	2.5	2	23	1006	1027	1005	1028	0.95
13	13	0.066	8.5	7.8	1.2	1	23	1102	1125	1102	1125	0.97

Sequence Information

Coding Sequence: ATGGCGTCCACAGTGGCCCAAGAGCAGCCGGGAATGCTGATAGATCAGCATGCTAGTGAGATCGACAGCGAGAGTTCGAGCGGATGTGAGGACCGGGACGCGAGAAAGCGACTGCGCGAGGATGTGGACAACAACAGTACAGGTAGCAGTCCAAAAAAGCGGAGAAAACAAACGACACCGGTAAGATTTCCAACGACAGTAATGAGCAGCAGTGAGCGAGCCGATTCCGAGGAGGACGAAAATGACCTTGACGAAGACCCCGTTGAGCCGGAAGAGACATCGATGCTTCCGGTCGACGAGGAAGGTCAACTGCTGCAGGAAGGTAAGCTACGAACGCTATCGCCTCAGGCGCTTATCCGAAATATCCTGGAAACagcgacaacaacaacaacagcaacaacaaaagACGAGAATCTTAACAGCGAGTTCCGTTGTCAATTCTGCGGTCTGTCTTTCGACGGCAGGGACACACTCTCGCGCCATCTTAAGTGCGAACACGACATCTCTAAGAATTCCTTCCACCAAGCGTCGATTCAAGTGGCGCCAAATGGCTCACCACTTCCTGGTCAGGTTAAAGTTAAGGTCGAACCACCGCAACAATCGCTAGAAGAATGCGAGAGTCCTGTCAATCTAGCGGGTTTAGGTATTAAGAGTTTCGCCGCCACTTGGCAAAATCCCCAAGCTCAGGCACAACACCAGTTGCAATCCCAACCGCAGTCCCAAAACCCGGACGAATGGCCATCAGCCAGTCCCACAACTTCCGTCCCGAATCATCTTCAGGCACTAACTTTCCCTGGCGCTCTGGCTCAGTACCTTCCGTTACAGGCATTTTCACTTGCCGACGCTGGACAGCTTCCCCGTCCACCCGTCGGTCCAGCGCCGGTCAGGATCTTCAATCCCGACGCTTACTGCGATCTTTGCAACAAGGAATTCTGCAACAAATACTTCCTCAAGACGCACAAGGCCAACAAACACGGAATATACGTAGACGCACCAGCACAGAATCCTGGCGACAATAACATACCGGGCAACTTGTTCGCTGGAGCGTTTGTCCAGGGTAACGTCAAAATGGAACAGCAGCCACAGAGACTTGAAGTACCAACACCGCTTGTTTCCGGACCTTTGAACAATACTATTCCCTGTGAACTTTGCCAAAAACGATTCAAGAACGAGGATTCACTCAGAAAACACAAACAAAAAGTCCACACCGACTCCCCTGAACATCAGGAGTCACATTCTCTACCAGCTACTGGAAGCAGCGTGGACGAAGATCGAGACATGACCAGAAACAGTCCAAGCGCTATGGAGGCTTTGTTCAAACAGGAATTCGGCGTGGAACAAGAGGATTCAAAGTTCATGCCAAGCCCTCGACATCTATCACCTCAGTCCAGTCAACAAGCCAGAGACTCCGGATTCAATGCTGATCGGCTCAGGAGGCTCGGCGTCATCAATCCAGAAGCTTTTTGCGAGATATGTTGCAAGGAATACTGCAACAAGTACTTCCTGCGCACGCACAAGATGAAGCGACATGGTATATACATACAGGAGAGTGAGAAGTCACCCAGCAATCCTGGAACTGCCGCCAGTTGGCATCAGATACAAACAAGTCCCCTGAATCTCATTGTCACCGACAGCAACGCCGGAAGTTCTTCAGAATCGGGTGATCGTGGGGAAGACTTCGAGTGCAAGCCTTGCGGAATCCGTTTTCAAACGCTGGGTTTGCAAAAAGCACATCGGGCAAAGATCCATGAGGGTGAAGATCAAAAGTCACCGAAAAACGATTATGAGCCCGAGTCCGGGGACCAACGTACCGATTCCATTTCAGAAGACCTGCAGAAATTGCAGACAATGATTCTGCAACTGAACGGCCTGACAACAAGCAAAACGTTCACCTGTAATGTATGTGGCAAAGAGTGTGAAAATGTAAATGCCCTCAGAAATCACATAACAATGGAACATGGCATGATTAGTGAAGATCTTTCTGAGCCTGGTCAACCTAACGAGGCCTCCTCCAATGGAACCTCGACTTTCTGCACCCTGTGCGACAAAGAGTATCAGACACTTGATGCATTGCGACAACATATCACGGAAGAGCATCAGCCCAACGCAAATAATGCTACGACAACGATTCCCCAGTCTCCCGTCGTTTCAGCTGTGGTACCAGTTCAACCTTCAACTCCACATGTAACTTCTTCGGTGACAATACCTACACCTTCATCAGCTTCAATAGCGACAGCGACTCCGCCACAACCTGAGAGAAAAGTCATTTCCATGACGCCCACTTCAAGCTACTGTGAAATTTGCAACAAGGAACTATGCAACAAGTATTTCATGAAGACGCACATGCAACGAATGCATAATATAGAGATTGAAAATGGTTCTCAGATCGGCGGCGTCATTTGTAACATCTGCAATAAGGAATTGTGCAGCAAATATTTCCTCAGAGTCCACAAACAAAACACTCATGGCATTGTCGACGAGGGCACCACAGCTTCGAACAAACAAGAATCTTACGAGCCAGTGAACAATGACGATTCGGCACTAAAACCCGATCAACTGGGAGATTTGAGTCACCGATACTTCACTCACTTCACGGAAGTTTGTCCAATTTGTAGTCGAAGATTCAGGAGTATAAAGTGGCTGAAGGCTCATCTTCTGGGCGAACATGGGAGACCTGGAGTTGACAAATGGCGTGAAATGGAGCATCAGTATCAGAATTCATCCAGAGGAGGCGTTAGATCATCCGGATCATCCAGCAGAGCTGGCCAACCGAATCAAAGCATCAAAATTCCTAACGGATTAGACGCGATGCAACAAATCAAGCACAACGACTATGTTGGGCTTGGAAATCAAGTTTTGTCGAGTCTCTTTGGTTCGTCGGTCGAGGAGCAACAGGCTAAAAACTATCGATGCTCCTACTGCAGCTTCACAACGACTGTACTACCCTTTTTGTTCCTTCACGAAAGGTCTCACACGAGTTCTCAAGAAAACAATCCTACCATGGAGACTTCTGTGCAGTGTCCAATCTGCTCGCAAAGTTTTGGCCAACCGGAACTCCTGCATCATCACCTCCTGACACATCATCAGTTCTCCGGTTTATTGTCGCAGTTCCAAGCGCCAATGATCAACAATCCCAGACTGGAGGACGGAAATCTTGGGAGGAATAATGATAGCTACGATAAAAGCGATTTCGATGGGAAGGACGATCGTCGTCAGGGTAGTCCACAAGTTTCGGGAAATCCGGAATCGGTCAAGAGCCAAAAATCCGAGGAACAAGCGGTTCAGGTTACGCCCCAAGGAGCCTTTAAGTGCGCTCAATGCGGATATGCGACGGCCCATGTCAACAGGATAAGGAGACACATAAAAAAAGATCACAAAACTCTCGGAGATCCAACGGAAAGCGTTATCGACGAACTGAGCAAGACTCTGAGGGATGTCGCAAATAAACACAAATTACCGGCCAGTTATGCGATGCCTCAAGACATGAATTCAAATCCCGATGCCACTGTGATGCAGCCTTTTCTCATTGAAGAACGGGATGTCACGAGAATGGGAGAAGAGGCTCCTGTCGAAAGACGCTTTGCACCTGCTCTTGTTTATCTGCCAGTAAGAGCCAGAGTCAACAATGTCCTGACCACGTCCTTCACTCTCAGTCCCGCCTGA
Protein Sequence: MASTVAQEQPGMLIDQHASEIDSESSSGCEDRDARKRLREDVDNNSTGSSPKKRRKQTTPVRFPTTVMSSSERADSEEDENDLDEDPVEPEETSMLPVDEEGQLLQEGKLRTLSPQALIRNILETATTTTTATTKDENLNSEFRCQFCGLSFDGRDTLSRHLKCEHDISKNSFHQASIQVAPNGSPLPGQVKVKVEPPQQSLEECESPVNLAGLGIKSFAATWQNPQAQAQHQLQSQPQSQNPDEWPSASPTTSVPNHLQALTFPGALAQYLPLQAFSLADAGQLPRPPVGPAPVRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDAPAQNPGDNNIPGNLFAGAFVQGNVKMEQQPQRLEVPTPLVSGPLNNTIPCELCQKRFKNEDSLRKHKQKVHTDSPEHQESHSLPATGSSVDEDRDMTRNSPSAMEALFKQEFGVEQEDSKFMPSPRHLSPQSSQQARDSGFNADRLRRLGVINPEAFCEICCKEYCNKYFLRTHKMKRHGIYIQESEKSPSNPGTAASWHQIQTSPLNLIVTDSNAGSSSESGDRGEDFECKPCGIRFQTLGLQKAHRAKIHEGEDQKSPKNDYEPESGDQRTDSISEDLQKLQTMILQLNGLTTSKTFTCNVCGKECENVNALRNHITMEHGMISEDLSEPGQPNEASSNGTSTFCTLCDKEYQTLDALRQHITEEHQPNANNATTTIPQSPVVSAVVPVQPSTPHVTSSVTIPTPSSASIATATPPQPERKVISMTPTSSYCEICNKELCNKYFMKTHMQRMHNIEIENGSQIGGVICNICNKELCSKYFLRVHKQNTHGIVDEGTTASNKQESYEPVNNDDSALKPDQLGDLSHRYFTHFTEVCPICSRRFRSIKWLKAHLLGEHGRPGVDKWREMEHQYQNSSRGGVRSSGSSSRAGQPNQSIKIPNGLDAMQQIKHNDYVGLGNQVLSSLFGSSVEEQQAKNYRCSYCSFTTTVLPFLFLHERSHTSSQENNPTMETSVQCPICSQSFGQPELLHHHLLTHHQFSGLLSQFQAPMINNPRLEDGNLGRNNDSYDKSDFDGKDDRRQGSPQVSGNPESVKSQKSEEQAVQVTPQGAFKCAQCGYATAHVNRIRRHIKKDHKTLGDPTESVIDELSKTLRDVANKHKLPASYAMPQDMNSNPDATVMQPFLIEERDVTRMGEEAPVERRFAPALVYLPVRARVNNVLTTSFTLSPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00653121;
90% Identity: iTF_00653121;
80% Identity: -