Tlin009032.1
Basic Information
- Insect
- Tromatobia lineatoria
- Gene Symbol
- -
- Assembly
- GCA_949699805.1
- Location
- OX453038.1:5520982-5527777[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1.5 1.9e+02 3.6 3.3 2 23 232 254 231 254 0.96 2 21 0.38 49 5.4 2.1 1 23 332 354 332 354 0.97 3 21 0.011 1.5 10.2 0.5 1 23 403 425 403 425 0.98 4 21 0.3 39 5.8 0.7 1 20 486 505 486 507 0.91 5 21 0.91 1.2e+02 4.2 0.6 1 23 519 542 519 542 0.87 6 21 1.8 2.3e+02 3.3 2.6 3 23 549 569 547 569 0.96 7 21 0.4 51 5.4 0.1 1 23 615 638 615 638 0.92 8 21 3.6e-05 0.0047 18.1 0.1 1 23 644 666 644 666 0.96 9 21 1.6e-07 2.1e-05 25.5 1.0 2 23 704 726 703 726 0.97 10 21 0.00044 0.057 14.7 0.8 1 23 732 755 732 755 0.96 11 21 0.012 1.5 10.2 0.0 2 23 763 785 762 785 0.93 12 21 0.00013 0.017 16.4 0.7 3 23 795 815 793 815 0.92 13 21 0.021 2.8 9.4 0.1 2 20 890 908 889 908 0.95 14 21 0.048 6.2 8.3 0.0 2 23 928 949 927 949 0.96 15 21 2.2e-06 0.00029 21.9 0.9 2 23 966 987 965 987 0.97 16 21 4e-06 0.00052 21.1 1.9 1 23 1010 1033 1010 1033 0.97 17 21 4.3 5.5e+02 2.1 0.1 2 23 1094 1116 1093 1116 0.94 18 21 0.039 5.1 8.5 0.9 3 23 1145 1166 1145 1166 0.93 19 21 0.24 31 6.1 0.4 1 23 1174 1198 1174 1198 0.98 20 21 1.3 1.7e+02 3.7 0.3 1 23 1203 1226 1203 1226 0.93 21 21 0.057 7.3 8.0 0.2 2 23 1257 1279 1257 1279 0.96
Sequence Information
- Coding Sequence
- ATGGACGATGTTTTTGGCGTTGAAAATGCCGAGAACGTGTGTAGATTGTGCCTTTCAACGGAGGAACCAATATCATCGGTATTCGCCGATCAACCATCCGCCGTTTCGTTAGTTACGAAAATTCAAGCTTCCTTGTCAATCGAGATACAAATCAGTGACAAATTATCGACTTCGATATGCGGTAATTGTCTAAAGAGAGTCAACGAATGGCATACATACAAAGAAGCTTGTTTGAAATCACAGGAAAAACTCCAAAGATGCTTCCGGGAACGGATGGAAACTCTTCCAAACATAAAAATGGAACCAATGGACGTGGAGGAGCCCATAGACACATTCGAGACAGTTCCACTGACATCAGACGAAGAATGGGAGGATTTACCAGATCTTCCAGTGAACGCGTGTCTGACAAACCTCTGCATCGATGCGCCGCGAAACGGCGAATTAAGAGAAATcacatcaataaaaaaagagttTATAGACGACGAGGAGAACAACACAAACGCGGAGATCGAATCCGTCTGCAGTCGAGAGTTATTATTAAATCCGATGGCAGTCGGAAGCAGCAAAGACGACAGAGTAATGGAAGCGGACTCAACGCAAAAGTTCATCAAGGTAAAAAGCTTGCGAGCCGTTAAAAAAAAGCCTCGACGCGGTCCAAAAACTCACTACACAGGAACGCGAAGATACAAACAGCGCTGTTCCTTCTGCCAGATATATCTTCACTCGAAATATTCATACGCAAAACACATGGAGCGTTTTCACAGCGGCAAAATAGTCGAAAGAAAAGCGCGAACGAAGCGAGAAATGGtcgataaaaatctggaaaatcaaGCGAACGGCTCTGCGTTCGAAGATTTTGAAGAGGATTTCGAAGAAGATCTCGAAGAAGTTGCTGAAGAGATGATCGAAGATGTCGAGGACGAGTTGATAAGCCTGGAAAAAGACGCTCCGTTGACACCAGTTCAGCAGAACATTATCAGCCAATTAAAGACCTTTTCCTGCTATTCTTGTGAGCAAAACTTTCAGGATCGGCGCAGCACTCTCAATCACATACGCCAACACATGCCCGACTTAAGGCCTTACACTTGCATCGCTTGTCTCACGGAATTTGCCGATCGTTCGATTTACAAGTTACATTGCGGCGCTTCTTTTCAATGCGCCATGAAAATAGCTCTCGTTGTACCGGAAAACGGCACGGAAAAGTATTTCACGTGCAATATGTGCCTCAGACCTTTGGCTAACAGGAAAGAACTTCTCAGCCATTTGTCCAAGCATTCTGATAAGCAGTACGAACAAATGATCGCGGGACCTTTCAGTTCGCCTCCGAAATTAAAGCCAATGACGCCTTTGACTTCCTCGCCCCTTAAAAATCGAGGAAAAACCGTTATAAATCCTCCAAATCCCGTCGCGAGAATTTCCAACGCTCCTTATCAAAACGGCGATCCCGCTCACAATCACACGTGCATTCACTGCGGAATGATCTACAGATACAAGCAAAATATGCTTAAGCACGtggagctttgcaaaaaaacgcCGCTGATCGAACGCGTGAGTTATCGATGCGTGCAATGCGGATTGACTTTTCTGGCGCTTAAGAGGTTCCAATCTCACCTCAGCACCGAGCATAAAACCCGAGAATTGGCCTGTTATCACTGCAAATCGAAATTCACAGAGGCTAAAGTTTATTCCGAACATTATAGGAAACACCGGGTTAATCATTCGCGAGCGAGCGTCGcgcagaataataatgataaggaACGTCCGGTAAAAGGTAAAAATGGGGAAAACGTCGCGATGAAAGAGAAAAATGGGGGAAAATCGAATACTAAAAATGCCGCGGTTTTCAGCTGCGCTGTTTGTCCCGGAAGCGCTTTTTCCTCGAGAAATCTTCTCGCGGAACACAGAAAAAGTCATCTCAAAATGAAGATATATTCCTGCACGATTTGCCGAAGAATGTTCGGCAGAGCTTCTGCTTTGGAGTCTCACATGGCCGATCATCAAATGGACGTGCCACTGAGCGAATTAGATCACAACAGCTCGATTCCTCTTCTCGATCGTGacgataaattaaatttctcgaTTAATTCAGACCCCGGAACTAGCAACACCGAATGTCACACTTGCGGAAAGGTTTTCGCTAATTATCCGAATCTCAGAAGACACATTCGCACGGTTCACGACGCAATTGGACGCTACAGTTGTTTCACATGCGCGAAAACTTTCAAGAGTGAAGATCAATGGAACAATCACATGGAAAACGAGCACAAGCAATCGGAGCCTTCGATAACTTGTCCTCAGTGTCCGGAAGAGTTCGATTCCGACGAATCCCTCGAAATTCATCGAATAAACGTTCACGGAATCAACGGCGAAGATCATCTCGCTTGTTACATATGCGGAAAAAAATTCGCCAACGAATCATCGTTGAGAATTCATCGGGGACATCATTTCCGCGTTAATTCGAGGCTGAGCATCGGAAATCGCCAGCAAAATGAGACTGGAGAGGAAAAAGTACGTTTAAGCACTTCGCTTTCTTCTGTTAATGATTCTACGGTAATTCACGGTTACGATGACCACGAAAATTTCGCAAGAACCTCGCCCGTTAAATCTCCGAGAGCCAGAAAGTCTTTCCCAAATTCCAGTCCCGCAAAACAGCTGATTAATATTCTGCAGTGCCAAGTATGCGACGATAGCTTTCCCGACGTTTCTACGCTTCGCAAACATCTTTGGGACGTTCATTGCGCTCGAAATAAACCCGAAAAGGTGTTTGCTACGGAGAAACTTCAGTGCGAATTGTGCACGAACGTTTTGCCGGACGAAGAGAGTCTCGCGAGTCACATGAAGTGGCACGAGGATAATCCTATATTGAGCAACGGTCCCAGAGCCGACACTCCGATGGAATGCGATATTTGCGGCAAGTTTTACAGCTCGAAAGCCAATCTTTGGAAACACAAGAAAAGACACAAAGCGAGAAGTTTGGCGGCCTTAAAATTGCAGCCAATTCCCAATAACAATTGGGGAGGTCGGGGATTTTCTTGCAACATTTGTCGAAAGGTTTTCGCCACGAGATCAACGTTGAAAAAACACAAAACTACGGCTCATCTGCAACCACAGAGTCGCGTGGCTCCGGAAAAAGGAACCGCGAAGCGATCGCCGAGCGGAAATGCGAAAGAGACGCAGAAAATCAAACCCATGAGACCCAAACTCGATTTTGATACTTTGATCCAACAGGTCGATTTTTCTGACATGGAAATGCCGAAAAGCAACTCGAAAAAACCTGTGACTTGCGTTCTCTGCAGGAAAATCGTGCCGGGGATGCGAGCGCTTTACAAACATCGGCAGATCGTTCACAAAATTGTCATCGGTAAAACGGCGTCTAAACCGGATATGCAATTATTGGCTTCGATGAAAGCGGAGAAAAGGACTGAAGTTGGTTGCACTGCGTGCTCCAAAGTCTTTTCCAACCTTCCGAACATGAAACAGCACTTTACAAAGGTTCACGGACCAAAAAGCTCCACGAACTTCCGTTGCACTGTCGAGGGGTGTAGACTTAGCTATAAAACTCTCGCTGCGAGGCTAAATCACGAGAAAACTCATCTCAATGTTATGTACACTTGCTCGCTCTGCCCTCGACACATGCTTAATCGAGATGCTATGGCTGATCATATGCTAACGGCTCACAAAAGTAATTACGCAACGGGAAACAGCAGAATGAtgctctgtaaaaaaataaacctcGATAATTATACGGTTAAAGGAGCAATTGGCAGAGAATGTCCGGTTTGTAAAGTCAACTATCCAAATTATAAATCTATGAAGATACACTACCTCAAGATACACGAAGGAGCGACTTAA
- Protein Sequence
- MDDVFGVENAENVCRLCLSTEEPISSVFADQPSAVSLVTKIQASLSIEIQISDKLSTSICGNCLKRVNEWHTYKEACLKSQEKLQRCFRERMETLPNIKMEPMDVEEPIDTFETVPLTSDEEWEDLPDLPVNACLTNLCIDAPRNGELREITSIKKEFIDDEENNTNAEIESVCSRELLLNPMAVGSSKDDRVMEADSTQKFIKVKSLRAVKKKPRRGPKTHYTGTRRYKQRCSFCQIYLHSKYSYAKHMERFHSGKIVERKARTKREMVDKNLENQANGSAFEDFEEDFEEDLEEVAEEMIEDVEDELISLEKDAPLTPVQQNIISQLKTFSCYSCEQNFQDRRSTLNHIRQHMPDLRPYTCIACLTEFADRSIYKLHCGASFQCAMKIALVVPENGTEKYFTCNMCLRPLANRKELLSHLSKHSDKQYEQMIAGPFSSPPKLKPMTPLTSSPLKNRGKTVINPPNPVARISNAPYQNGDPAHNHTCIHCGMIYRYKQNMLKHVELCKKTPLIERVSYRCVQCGLTFLALKRFQSHLSTEHKTRELACYHCKSKFTEAKVYSEHYRKHRVNHSRASVAQNNNDKERPVKGKNGENVAMKEKNGGKSNTKNAAVFSCAVCPGSAFSSRNLLAEHRKSHLKMKIYSCTICRRMFGRASALESHMADHQMDVPLSELDHNSSIPLLDRDDKLNFSINSDPGTSNTECHTCGKVFANYPNLRRHIRTVHDAIGRYSCFTCAKTFKSEDQWNNHMENEHKQSEPSITCPQCPEEFDSDESLEIHRINVHGINGEDHLACYICGKKFANESSLRIHRGHHFRVNSRLSIGNRQQNETGEEKVRLSTSLSSVNDSTVIHGYDDHENFARTSPVKSPRARKSFPNSSPAKQLINILQCQVCDDSFPDVSTLRKHLWDVHCARNKPEKVFATEKLQCELCTNVLPDEESLASHMKWHEDNPILSNGPRADTPMECDICGKFYSSKANLWKHKKRHKARSLAALKLQPIPNNNWGGRGFSCNICRKVFATRSTLKKHKTTAHLQPQSRVAPEKGTAKRSPSGNAKETQKIKPMRPKLDFDTLIQQVDFSDMEMPKSNSKKPVTCVLCRKIVPGMRALYKHRQIVHKIVIGKTASKPDMQLLASMKAEKRTEVGCTACSKVFSNLPNMKQHFTKVHGPKSSTNFRCTVEGCRLSYKTLAARLNHEKTHLNVMYTCSLCPRHMLNRDAMADHMLTAHKSNYATGNSRMMLCKKINLDNYTVKGAIGRECPVCKVNYPNYKSMKIHYLKIHEGAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00653065;
- 90% Identity
- -
- 80% Identity
- -