Tlin009383.1
Basic Information
- Insect
- Tromatobia lineatoria
- Gene Symbol
- -
- Assembly
- GCA_949699805.1
- Location
- OX453038.1:9065505-9071880[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 6.2e-05 0.008 17.4 4.0 1 23 247 269 247 269 0.98 2 11 0.035 4.5 8.7 12.0 1 23 275 297 275 297 0.95 3 11 7.5e-05 0.0096 17.1 6.6 1 23 303 325 303 325 0.99 4 11 0.00051 0.066 14.5 1.6 1 23 331 353 331 353 0.95 5 11 1.6e-06 0.00021 22.4 1.9 1 23 359 381 359 381 0.97 6 11 1.8e-05 0.0023 19.0 0.1 1 23 387 409 387 409 0.97 7 11 9.8e-05 0.013 16.7 1.6 1 23 414 436 414 436 0.97 8 11 8.4e-05 0.011 16.9 0.0 1 23 442 464 442 464 0.96 9 11 0.00016 0.02 16.1 0.1 2 23 475 496 474 496 0.96 10 11 2.6e-05 0.0034 18.5 4.5 3 23 560 580 558 580 0.96 11 11 3.2e-05 0.0041 18.3 4.6 1 23 590 612 590 612 0.97
Sequence Information
- Coding Sequence
- ATGTGCACTACGCCTGGTAACGCCGCCAGCGGTTTTGGATACGCTTGGTCTTTCGGCGGTCCTGGGACGGAAGCCAGAGAAAATTCTCAGGTAGACTTGACGACGAATATTAATTATGCCGTTAACAATAATCAGGATCAGGGTTCGTCGCAGAAAATTCAGGTGGACATTAAACCGGCTAAAGTCGCTATTAGCGCTATACCGAGAAGGCCGATGTTCGCCATGAACGAGAGTTGCCAACAGACGCCTACTACTCATCATGGTCACAGCGGTTCGGGCGGAGCGCAAACCGGTGGAACTGCTGGAGGAGCTCACAATCAAACGCACGGTACGCCTGTTCGTAACAAGAACAAGCATCACGATGTATTTTCATTGACCTGCGACAAGGGCGGTTGCAATTGCGACGCTGCGCATGCCACAACTCCCGCTCCATCATCTTCGTTATTCTCAAACACTCTCGTTTTTACAACAGCGGACAAACATGCCATGTCCAAACACTTCATGACGCCACTTGGACCTCTTCAACTTACCGCTGAAGAGTGCAACGAAATACTGATGAAAAGGGCTGCAGCTGCTTCTAATCAGGGAAACGCCAACAACGTCACCACCGGACAGGCCGATGGTAACGCTTCGCACTTTGGTCATGTTTTGACTCATGTTAATACGTCTCAAATAGAGACTAAAGTAAAACAACAACAAGACATGGCCAGTCAGGTTCGCGTGCCCAAAGAACGTCCTTATTCTTGTCCCGAGTGCGGAAAGTCCTTCCTCCTTAAGCATCATTTAACAACACACACGAGAGTTCATACCGGAGAACGTCCGCACATTTGCGTACATTGCGGAAAGACATTTGCGCACAAACATTGTCTACACACGCATTTGTTGTTGCACAGCGCTGAGCGACCTTATCAGTGTAGGGAATGTAAAAAGTCCTTCACCCTTAAGCATCATTTGGTGACGCACACGCGTGTTCACACGCGCGAACGTCCCTTCGTTTGTCAGGAGTGCGGACGAGCTTTTCCCCTTAAACGACATCTCGTAACTCATAGCAAATTTCACTCTGGCGAACGACCTTTCGTTTGCGAAGAGTGCGGTGAATCCTTCTCCCAGAAGGATCATCTTACGATGCATTCGCGCTTCCACGGTAGCTTACATCCTTTCGTTTGTCCCGATTGCGGAGCTACCTTCCAGAGAAAATTCGAACTTGTTAATCACGGACGACTTCACGGACGCGTGCCTCATTCTTGCACCGTTTGCGGCAAAGAGTTTCTCCAGAAAAGAACTCTTCTCGCTCACATGCGTCTACACACCGGCGAAACTCCCTTCGCTTGCACCGTTTGCGGAGAAGCTTTCCCAAGGAAAATTGATCTTGTTGCTCATAGCAAGATTCATAATAACACCAACAGCGACGAGAAATCTCTCACGTGCAGagaatgcGGCCTGGACTTTCCCAATCGCGAAGCCCTGACGCTCCACCTGAGGTTACACTCCGGCGATCGAACCCTGGTAACGGATCTTTGCGGTTTAGCAGCGGCCTTCCAACAAACACCCGGTCACTTTTTGACGCCAAACGCCACTCATCAGATGAACGGCCCGATAGGCACGCCAGGAGTGAGTCACATGCACGGAGCGACGCAAACCTCACCGCCCGCGGGTCCAAAGCCAAAACCTCATTTATGTCCAGATTGTGGTCGCGGTTTTGCCCAAAAGCACGGTTTGCATCAGCATCAGAGACGTCACACGGACGGAAGTTGTCACATAAGATCCCACGTGTGCGACAAATGTGGAAAGGCATTTTTCCAGAAGAATCATCTGTTGCTTCATCAGCGTCAGCACATGGACCCACCGCCGTCGATATTACGGCAACAGCAGCGATTGGCAGCCCAGGCGGCAGCGCAGTTggcgcaacaacaacaacagggTCAACAACAACAAGTGCAAGTGCAGCAAGTTCAACAAGTGCAACAGCAGCAGGTGCAGGTTCAGCAAGTTCAGCAGgtgcaacagcaacagcagcaggttcaaccgcagcagcaacaacagcagcagcagcaggcgcagcagcagcaggcgcAACAACAACAATCACAACAACAACAGgcgcaacagcaacagcaggctcaacaacaacaacaggcGCAACAACAGGTCCAACAACAAGTACAGCAAGCCCAACAAGTTCAGGGACAACAAGTGCAAAGACAGACGCAACAACAgccgcaacaacaacaacaacaaccgcaacaacagcaacaacagacGTTGACCGTCGACACGAAACAACTCCAGGCAATACAGCAACAGGTGCAACAACAAGTGCAACAACAAgtacaacaacagcagcagcagcaacaacaacagcaacagcaagcTTGTCCTGTTGATTCGAAATCAATACAACTGCAGACGATACAACAGGTTCAACAACAAGTGCAACAACAagtacaacaacaacagcaacaacaacaacaacaacaacaggcATGCGCGGTAGACACAAAAGCAATACAATTGAACGTCACCATGTGA
- Protein Sequence
- MCTTPGNAASGFGYAWSFGGPGTEARENSQVDLTTNINYAVNNNQDQGSSQKIQVDIKPAKVAISAIPRRPMFAMNESCQQTPTTHHGHSGSGGAQTGGTAGGAHNQTHGTPVRNKNKHHDVFSLTCDKGGCNCDAAHATTPAPSSSLFSNTLVFTTADKHAMSKHFMTPLGPLQLTAEECNEILMKRAAAASNQGNANNVTTGQADGNASHFGHVLTHVNTSQIETKVKQQQDMASQVRVPKERPYSCPECGKSFLLKHHLTTHTRVHTGERPHICVHCGKTFAHKHCLHTHLLLHSAERPYQCRECKKSFTLKHHLVTHTRVHTRERPFVCQECGRAFPLKRHLVTHSKFHSGERPFVCEECGESFSQKDHLTMHSRFHGSLHPFVCPDCGATFQRKFELVNHGRLHGRVPHSCTVCGKEFLQKRTLLAHMRLHTGETPFACTVCGEAFPRKIDLVAHSKIHNNTNSDEKSLTCRECGLDFPNREALTLHLRLHSGDRTLVTDLCGLAAAFQQTPGHFLTPNATHQMNGPIGTPGVSHMHGATQTSPPAGPKPKPHLCPDCGRGFAQKHGLHQHQRRHTDGSCHIRSHVCDKCGKAFFQKNHLLLHQRQHMDPPPSILRQQQRLAAQAAAQLAQQQQQGQQQQVQVQQVQQVQQQQVQVQQVQQVQQQQQQVQPQQQQQQQQQAQQQQAQQQQSQQQQAQQQQQAQQQQQAQQQVQQQVQQAQQVQGQQVQRQTQQQPQQQQQQPQQQQQQTLTVDTKQLQAIQQQVQQQVQQQVQQQQQQQQQQQQQACPVDSKSIQLQTIQQVQQQVQQQVQQQQQQQQQQQQACAVDTKAIQLNVTM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00899020;
- 90% Identity
- iTF_00653039;
- 80% Identity
- -