Eman039577.1
Basic Information
- Insect
- Ephialtes manifestator
- Gene Symbol
- -
- Assembly
- GCA_963970395.1
- Location
- OZ019979.1:20498809-20507621[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 6.9e-05 0.013 17.3 4.0 1 23 247 269 247 269 0.98 2 11 0.038 7.3 8.7 12.0 1 23 275 297 275 297 0.95 3 11 8.2e-05 0.016 17.1 6.6 1 23 303 325 303 325 0.99 4 11 0.00057 0.11 14.4 1.6 1 23 331 353 331 353 0.95 5 11 1.8e-06 0.00034 22.3 1.9 1 23 359 381 359 381 0.97 6 11 2e-05 0.0038 19.0 0.1 1 23 387 409 387 409 0.97 7 11 0.00011 0.021 16.7 1.6 1 23 414 436 414 436 0.97 8 11 9.3e-05 0.018 16.9 0.0 1 23 442 464 442 464 0.96 9 11 0.00018 0.033 16.0 0.1 2 23 476 497 475 497 0.96 10 11 2.9e-05 0.0055 18.5 4.5 3 23 561 581 559 581 0.96 11 11 3.6e-05 0.0067 18.2 4.6 1 23 591 613 591 613 0.97
Sequence Information
- Coding Sequence
- ATGTGTACTACACCCGGTAACGCAGGAACTGGCTTCGGCTATGCGTGGTCTTTTGGCGGGCCCGGCACAGAAACCAGGGAAAATTCACAGGTTGACTTAACGACAAATATCAATTATGCCGTTAATAACAACCAGGATCAGGGTTCGTCGCAGAAGATACAGGTCGATATAAAACCTGCTAAAGTGGCGATAAGCGCCATTCCAAGAAGGCCAATGTTTGCAATGAACGAGAGTTGCCAGCAGACGCCGACTACTCATCACGGCCACACAGCAgctggaggaggaggaggaggtggaggcGGTGGAGCAGGCGGAGGAGGAGCTCACAATCAAACGCATGGTACGCCAGTGCGAAACAAGAAGCATCACGATGTATTTTCATTGACCTGCGATAAGGGTGGTTGCAATTGCGACGCAGCTCATCCAACACCTGCACCATCTCTATTTTCAAACACTCTGGTTTTTACCACAGCGGACAAACACGCCATGTCCAAACACTTCATGACGCCGCTTGGACCGTTGCAGCTCACCGCAGAGGAATGCAACGAGATACTGATGAAGAGGGCTGCAGCTGCGTCGAATCAAGGAAATACCAACAACGTTAGCAGCGGACAGGGCGATGGTAATGCTGCCCACTTTGGTCACGTTTTGACCCACGTTAATACGAGCCAAATCGAGACCAAAGTGAAGCAACAACAGGATATGGCCAGTCAGGTTCGCGTGCCCAAGGAACGGCCGTACTCTTGTCCGGAGTGCGGCAAATCTTTTCTTCTTAAACATCATCTTACGACTCACACGCGTGTTCACACCGGGGAACGTCCACACATATGCGTACATTGCGGCAAGACATTCGCGCACAAACATTGTCTTCACACGCATCTATTGTTGCACAGCGCCGAGCGACCTTATCAGTGTCGGGAATGTAAAAAATCCTTCACCCTTAAGCATCATTTGGTGACGCACACGCGTGTACACACGCGGGAACGTCCGTTTGTATGTCAAGAGTGCGGACGTGCTTTTCCGCTTAAGCGTCATCTCGTAACGCATAGCAAATTTCATTCTGGCGAACGGCCTTTCGTTTGCGAAGAGTGCGGCGAATCTTTCTCGCAGAAGGATCATCTTACGATGCATTCGCGCTTCCACGGTAGCTTACATCCCTTCGTTTGTCCTGATTGCGGCGCGACCTTCCAGAGAAAATTCGAGCTTGTTAATCACGGACGTCTGCACGGACGTGTGCCACATTCGTGCACTGTTTGCGGCAAGGAGTTTCTTCAAAAGCGAACTCTACTCGCTCACATGCGTCTACACACCGGCGAAACACCGTTCGCTTGCACCGTTTGCGGGGAGGCCTTCCCGCGCAAAATTGATCTCGTCGCGCATAGCAAGATTCACAACAATAATAGCAACACCGACGAGAAAGCTCTCACGTGCAGagaATGCGGCCTGGACTTTCCTAATCGCGAAGCCCTGACGCTCCACCTGAGGTTACACTCCGGCGATCGAACCCTGGTAACGGATCTCTGCGGTTTAGCAGCGGCCTTCCAACAAACGCCGGGTCACTTCTTGACGCCAAACGCCACTCATCAGATGAACGGTCCTATCGGCACGCCGGGAGTGAGTCACATGCACGGGGCGACGCAAACATCGCCGCCAGCGGGCCCAAAGCCGAAGCCGCACCTATGCCCGGATTGCGGTCGTGGTTTTGCCCAGAAACACGGCCTCCATCAGCACCAGAGACGGCACACGGACGGCAGTTGTCACATAAGATCCCACGTGTGCGACAAGTGCGGCAAGGCATTCTTTCAGAAGAATCATCTGTTGCTGCATCAGCGTCAGCACATGGATCCGCCGCCGAGTATATTGCGGCAGCAGCAGCGATTGGCAGCGCAGGCGGCAGCGCAACTggcgcaacaacaacaacaacagcagcagggCCAACAAGTGCAGGTGCAGGGTGTTCAGCAAGTGCAGCAAGTACAAGTGCAGCAAGTGCAACAGgtgcaacaacaacagcagcaagtACAgccgcaacaacaacaacaggcACAGCAACAACAGTCTCAGCAGCAGCAAGCGCAGCAACAGCAGGCGCAACAACAGGCGCAACAGCAGGCGCAACAACAGGCGCAACAACAGGCGCAACAACAGGCGCAACAGGTagtgcagcagcagcaacaagcgCAACAACAGGTCCAGCAGCAAGTCCAACAAGCCCAACAAGCCCAACAAGTCCAGGCACAACAAGTGCAACGACCACAACAGCAGCCGCAACAAccacaacaacagcagcaggcGTTAACAGTTGACACGAAACAGCTGCAGGCAATACAACAACAGGTTCAGCAACAGGTGCAGCAACAagtacaacaacaacaacaacaacaacaacagcagcagcaacaagtacaacaacagcagcaacaggcATGTCCTGTTGATACAAAATCCATACAACTGCAGGCGATACAGCAACAGGTACAGCAACAGGTGCAACAGCAAgtacaacagcagcaacaacagcaacaacaacaacaacaacaacaacagcaacaacagcccTGCGCGGTAGACACTAAAGCAATACAGTTGAACGTCACCATGTGA
- Protein Sequence
- MCTTPGNAGTGFGYAWSFGGPGTETRENSQVDLTTNINYAVNNNQDQGSSQKIQVDIKPAKVAISAIPRRPMFAMNESCQQTPTTHHGHTAAGGGGGGGGGGAGGGGAHNQTHGTPVRNKKHHDVFSLTCDKGGCNCDAAHPTPAPSLFSNTLVFTTADKHAMSKHFMTPLGPLQLTAEECNEILMKRAAAASNQGNTNNVSSGQGDGNAAHFGHVLTHVNTSQIETKVKQQQDMASQVRVPKERPYSCPECGKSFLLKHHLTTHTRVHTGERPHICVHCGKTFAHKHCLHTHLLLHSAERPYQCRECKKSFTLKHHLVTHTRVHTRERPFVCQECGRAFPLKRHLVTHSKFHSGERPFVCEECGESFSQKDHLTMHSRFHGSLHPFVCPDCGATFQRKFELVNHGRLHGRVPHSCTVCGKEFLQKRTLLAHMRLHTGETPFACTVCGEAFPRKIDLVAHSKIHNNNSNTDEKALTCRECGLDFPNREALTLHLRLHSGDRTLVTDLCGLAAAFQQTPGHFLTPNATHQMNGPIGTPGVSHMHGATQTSPPAGPKPKPHLCPDCGRGFAQKHGLHQHQRRHTDGSCHIRSHVCDKCGKAFFQKNHLLLHQRQHMDPPPSILRQQQRLAAQAAAQLAQQQQQQQQGQQVQVQGVQQVQQVQVQQVQQVQQQQQQVQPQQQQQAQQQQSQQQQAQQQQAQQQAQQQAQQQAQQQAQQQAQQVVQQQQQAQQQVQQQVQQAQQAQQVQAQQVQRPQQQPQQPQQQQQALTVDTKQLQAIQQQVQQQVQQQVQQQQQQQQQQQQQVQQQQQQACPVDTKSIQLQAIQQQVQQQVQQQVQQQQQQQQQQQQQQQQQQPCAVDTKAIQLNVTM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01131010;
- 90% Identity
- iTF_01497653;
- 80% Identity
- -