Tlin008131.1
Basic Information
- Insect
- Tromatobia lineatoria
- Gene Symbol
- -
- Assembly
- GCA_949699805.1
- Location
- OX453037.1:18631528-18652204[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 7.5e-06 0.00096 20.3 1.0 1 23 224 246 224 246 0.98 2 31 0.0032 0.41 12.0 1.9 1 23 269 292 269 292 0.96 3 31 0.00024 0.031 15.5 0.5 2 23 299 321 298 321 0.96 4 31 0.00024 0.031 15.5 0.4 1 21 341 361 341 362 0.95 5 31 0.018 2.4 9.6 0.3 2 23 459 480 458 480 0.96 6 31 0.0085 1.1 10.6 0.2 1 23 486 509 486 509 0.91 7 31 0.00014 0.018 16.2 0.1 1 23 569 592 569 592 0.96 8 31 0.0096 1.2 10.5 0.4 1 23 598 621 598 621 0.96 9 31 0.18 23 6.5 1.9 1 23 634 656 634 656 0.97 10 31 3e-05 0.0039 18.3 0.6 3 23 701 722 699 722 0.96 11 31 0.044 5.7 8.4 0.9 2 23 787 810 786 810 0.93 12 31 6.7 8.6e+02 1.5 0.0 2 23 819 841 819 841 0.83 13 31 0.14 18 6.8 0.1 2 23 848 870 847 870 0.95 14 31 1.5e-05 0.002 19.3 1.2 1 23 878 900 878 900 0.98 15 31 0.17 21 6.6 1.0 3 23 935 957 933 957 0.85 16 31 0.00025 0.032 15.5 3.3 1 23 960 983 960 983 0.97 17 31 0.0011 0.14 13.4 0.5 2 23 990 1012 989 1012 0.96 18 31 0.0039 0.5 11.7 5.1 1 21 1039 1059 1039 1060 0.95 19 31 0.01 1.3 10.4 1.7 2 23 1074 1095 1073 1096 0.92 20 31 0.16 20 6.7 1.1 1 23 1099 1122 1099 1122 0.95 21 31 0.058 7.5 8.0 2.9 2 23 1129 1152 1128 1152 0.91 22 31 3.6 4.7e+02 2.4 0.2 2 23 1160 1182 1160 1182 0.94 23 31 4.3 5.6e+02 2.1 0.0 2 23 1189 1211 1188 1211 0.87 24 31 0.27 35 5.9 2.7 2 23 1220 1242 1220 1242 0.96 25 31 1.5 2e+02 3.5 0.9 2 23 1248 1270 1248 1270 0.92 26 31 0.018 2.3 9.6 0.1 1 23 1327 1350 1327 1350 0.96 27 31 0.0063 0.81 11.0 2.5 1 21 1381 1401 1381 1402 0.95 28 31 0.16 21 6.6 1.2 2 23 1501 1523 1500 1523 0.94 29 31 0.56 72 4.9 0.4 2 23 1530 1552 1529 1552 0.94 30 31 0.83 1.1e+02 4.4 2.5 1 23 1563 1585 1563 1585 0.97 31 31 0.075 9.7 7.7 0.1 3 19 1594 1610 1594 1613 0.94
Sequence Information
- Coding Sequence
- ATGGAGACGAAGGAACGATACGACGAGCTTTGCAGGCTCTGCGCTTCTTACGACGCGGTGAAAATGGATATATTCGGAAAAGAGGGCAAGAATCGTCAGCTCGTTGACAAGATACAGACTTGTTTGCCGTTCAAAATTGACGAAGATGATAGACTTCCAAAGTGTCTGTGCTACAGATGCATGTacaatcttgaaaatttttacgacTTTAGAACGGCTTGCGTCAACGCAGTTGCCTTATTGGAAAGGTGTTTGCCACCAGGCAGCAATACCGCAGACAGTGAAGTACAAAATGACGTTAACAATTATTCGGAATTGCGAACGGAGCTTCtcaaagagaaggaaaaaatgcCTATTCTCATACCCGAGGCCCCTATAGTGAATCCTAACGCGGCGCTGGGTACGCCGCCTAGACTGAACAGTGATGGCGAGGCAGATCAGGAGATCGAGGAGATTCTCGACGCCAGCGGCACCGAGGATGGCTTCGAAGATACAGAAGATCGGAAATCGGACGAGTACGAGATGGACATGGAAACGAATCCCagtgattttttggaaatgacGCCGATGGTCACGGAGGAATTGGACGAGAATGAAACGGCAAAAGCTCCGAAAGTTGAAACACGTAATTCCGATGTCTTTCAACATACAGCTGAGCAACACGAAGTTTATGTTTGCTCGCTGTGCAACAAGGCGTTCAGTTCCAAAGGCCATTTGTCTCTTCATGCGAGAATCCATGTGGGCGCGGGCGACGTTATCGGTGCCAAAGTCGTCACGGACGATCATACTTCGTACAAGAGACCTTATCAGTGCGATCTGTGCAACAAATCCTATTCGACAGCAAAGCATCGATGGGGTCACGTCTCCACGACTCACAGAGGGCATCCCGCTGTAACTTGTGCTTATTGTTCGCGGATATATTCAACGCGAACGAATCTCGAGGAGCATATAAAATCAAGACACACGGGCTTACCACCGCCTCCGGAGTTGCCGATTCCCTACGTTCAACCGGACAACAGATACAAATGCAAAACATGCCCAAAAATGTATACCACAGTTACAGAGCTAAATAAACACGGACGAGTATGTCTGGGTGATCGGCCGAaggaaaaaccaaataaaaaagcgCCGCGCAAGAGTAAGAGCCTCATCGATACGACGGATCCGTCGAGCACCGACACCGACAATGACAGCAAGGATTATAGAAACGCTGAGgctaaattatcgaaaaatccaCAACTCACAATTCTCAAGCAGGCACTGATAAAAGGCGAAGGCTCGAAGCGCGATTACGAGGACAGAAATACTTCGAATCATAAGCTAGTCGAAATCCCGAAGACAGATGGAGTCGAAGGCGACGGACAAAAGCGATGGTATTGCGAGAGTTGCCCGCAGAATTTTTCGTCGGTGGACAAGCTGAAAGAACACGAGACGACACACGATGCGGAAAGgccgtatatatgtatattgtgtGAAAAGGATTTTGTTGTAAAATCATCATTAAGCAGACACATACTTTCGTCACACGGTGTCGATCCCAGTCCGATAGTTGACAGTGATAAGTGCTTGAAGAAAACGGTATTAGCGCAGTCGTGGTCGAAACAGTTGATAAAAACGGAAAGAACAAAAAGTGGCAGGGACGGTTCCGTTTCATCTGAGGATGCCGAAAGCGCGCCTGGTAATATGATTGAAATCGAGACGGTATTCGTGTGTGAAATTTGTACACGGGACTTCAACGACCGCGCGTCATTGTGGCTTCACATCCGCGCGACACACAAAGAATGCGCTGCTTTCGCGTGTGGCGTGTGCTTAAAAATTTGTTCGGACAACGCGCAGCTTCTTAATCACGTTAATATGTATCACGGAGGCTCGAAACTCTTGATTTCGGAGCAGCGAAGATACAGCTGCACAATATGTGGAAGGCAACACGACTCGAGGAAAAAATTGATGACCCACGTGTCCATACACAACGTCGATCCTGGCTACGATCCCGCGAGCTTCGTTCAATTGAACAGCAATTATTACAACGAGAATGTCAATAGCAACGAAGCCAACGAAGCACTGATGGATTTCGATGCCGAGGATGGCGACAAAATTGACTGTTATATTTGTTACAAGTCGTTTCCTAACGAGGATCATCTCATTCGGCATCAACGGAATGCGCACAAGtCTGAGCCTGTGATACCGAGTGGCGGAGACCCATCGGCTACCAGCAACGGTTCTGGTGCACCGGGAGTCAACGGCACCAAAGCTCAATATCACCTGTTCTTCGTCTGTGAACTGTGCGGAAGTTCTCATCCGAGCAAATGGGAACGTTGGCTGCATGTCAGCAGCAATCACAGCGAAGAGCCATCGATAAGATGCGAACGCGAGGATTGTGGCAAAATCTTTGCTACGAAGACCCTGCGAAACGACCACGCCCAACACCACTTAATCCAAGGTTCTTCGCCCAACACTTGCGAAGTTTGCGGAAAATTGTGGGGCAGTCGAGTGGATTATTGGAAGCACGTAATGGGCGTTCATTCGGATACAGTGCCATTGATATGTGGCGTCTGTCTAAAAGTATTTCCCGACGTGATGAAGCTGAGCAGTCACGTGAAATCAAATCACTGGCCTCTGACAAACGGTGATTTTAGTTGCGACATTTGCGGCCGACCTTATTCCAACAAATCGAAGATGTCGCGCCACCGGAAGATTCACGGCTTGGATGTCGAAGCCTCGGCGAATAATGGCGTGAACGAGAACGTGATTAACGAATCTTTGCCCTACGAGAAGACCGCGGTACCGGAAACTGAATTAACATGCGAATTGTGTGCCGATCTTACTTTCTACAATTGGGAAAGTCTGTGCAATCATCGTAGATCGATGCACGGCCTATTTCCTTGTGATCTTTGCAACAAATGTTACGGCAGAACGTCGCATCTGTGGAAACACGTTAATCGCGTTCACAAAGGACACAAAGACGTGACTTGTAGTTATTGTTTGAAAACTAGCGCCTCAAAGGATCATCTAGCGGCGCACATATTGAAAATTCATCGTTACGAACCTTACGTCAAGCTGGGAATTCGCGAGTCCTCGAATTTCAAGCAAACTACCGTCGAGGGCGAGGGAATTCATCACTGCGAAAAATGTAACAAAGGCTTTCACAAGCGTTATCTTTTGCGCCGTCACATGAAAGGCTGCCAAAATTATCGAAAAGATCCTGGCGCGCTTCTCACTCGATGTCGCGCCTGCGAAAGAATCTTCAAGGACCGCGCGAGTCTTCAGAAACACGTTGAAAATCACCACAGCACTTACACCTGCCATTTGTGCAACGAAACCGTAACCTCTAAGCTCGGAATCATGACTCACAATCGTGTCAATCACATGGAACATCCGGACTTGACTTGCGATCACAGCAGCTGCAAAAAGTTGTTCAGAACTAAAGAGGATCTCGAGTCACATCGTAAAGATCACAAATATCACAATAGCCCTAATGTTTGCGATTTTTGCGGCGATACCGTCGAAAATAAACTCAAACTCAAGATGCACGTTCTCTCGTTGCACAGAAATGAAATTGGTGTTTCCTGCGGCGTTTGCTTGATTCCCATGAAAGATCCAAAGGATTTGAAGAAACATGTGGAGGACGAACACACGGGGGTTTTGCTTAAACCAAATACCTGCCAGGTTTGTGGTAAACAATACGCCTCAAAGTGGAAAGCCTTCGATCACACGAAAAAATGTCACGGCAAAGTATTCCGAACGTGCAAACAGTGCCTCGCCGTATTTACAACCGATTCCGACATCCGTTATCATTACGAGCACATTCACAATGTGCCGAAAGATCAGCTTGCTGGTTTCGAAAAACGTCTCGAAATGAGGCCCGACGAATTCGAAAATCCCGACGTCGTCGTAAAAGAAGAACCCGAGGATTACGACTACGACGATGGCGTTTGCGACGACGATGCTTTCGACTACAAACGACGAAGAAACGATACATACGACTGCGATATATGTCCTGAAATATTTCTCAATCGCGACACGCTCTCCGATCACTACAGAAACGTTCACAACAAGGATCCGCAAAAGATGTTTAAAAAGATAAAGCTCGACGGCTCGAAGAGTTCCAAGGCCAAGCAAAAAATGCGGGAACGCGAAAATTTCGAATGCAGAAATTGCAGCAAACAATTTTGCACTAAAACGCTCTTCTGGAATCATATTAATGTGTGCACGAGAAGAAATTCAGGCAGTCAAGAGGAAACGCAATATCCTACGTCGATTCTCGAGGCGCATctcaaaaacaacaacaaaattaagaAAGAGCCTCTTGAGCCCGTGCTTAACGAATCCAACTTGAATATACCGGATTTTAATCTGTTCGAGGACATTAATATGCAACTTTCGGAGCAAAAACCGGTACCAAATCTTATGCCACTTTCGCAAATGCGACTGCTCAACAACATGAAGTGCTCgagaaaagattctcgaaaggTTTACGACGAATCCACAAACACCGAATGCACCTGCGAAGTTTGTGGCAAACCTTGGCCAGCTAAGAAGCATCTCTGGCAACATTTGATTAGATTTCATAGAGCCGAAGCTGCAGTTACGTGCGGAGTCTGTCTAAAACTGTGCAGAACTTACGAGGAACTGGCCGAGCATCTTAAAGCCACTCACGAGTCGATTCTCTCGTGCGAGGGCAACAATTTTACGTGCAAAACTTGCGGACGTTATCACAACGCTCGTAGCAAGTTGTTACTACACATGAGCATCCATATTAACAGCACAGGCATTGCCTGGTGCCCAAAGTGCGAACAGAGCTTCGAGAGTGAGGAAAAGCTCAACGAACACTCGGCAACGTGTGACAAACGGCAGCCCGATTACGAGGAGCACAGCGTCGAATTAGCCCGAAATCTGAAGCACGAAGTCGACGACAAAGGCAGTTTGATCGGAGATGGAACTTCACTTACCGGCGAGGGCGATTTTTCCGATCGTCATCACAGCAATTCTGATAATTCGGAGGGTGACGACACCAGCAACGGCGAAACCGGCACTGAGGATGAAGAGCAAGAACCGGAAGAGGAAACCGAGTCGAGAACCAATAGTCGAGCTACCTGTGAAGTTAGTTATCGGTCGGAGAGCGAAGATGAACGTGAATCTGACGATGAAGACATTCATGTGACCGGGGAAATAGACATTGACGAAAAAGTGAAGATTGAATCTTCGGTAGAGGCAAAGAACGTGAAAAAAGCCGGACAAGTGACTGCTAACAGCGGTGAAGGTGAGCAGAACGAAGATAAGGAAATAAAACCAACAGATGCGGTTGAAAACATTCAAAAGGAAAAAGATCGGAAAAACCGTGTAATCGAAGAATCGGATGACGATGGTCCGCCGATTTTGAGTCCAGTAATGCCACTGTCAGCGGAACACGATACCGAGGAACGTGACGATGTCGTTGGTCACAAACTGAGCCCGATGGTACCTTTCAAAGTGCAGGAGGAAAACGAAATGAAGACTGTGGTCAAAGACGCGCAGCGACCGCAACCGGTTGAGGTTGACGCTGAAGATTCGCCGTACGATGAGGGCGAAACTTCTGCCGGTAATGGCAAAGAATTCGCCGAGGAATTAGCTTCGGAGGAAGAAGCAGAAGCCGAATTAGCTGAGGATGACAACGACGAAATTGATGACGAAGATAGCAGAATTCACGTGGTTAATCCCAACGACGAATATCATTCGGACGACAGCCAAGGTGACGACGAGTCTGCGGGAGAGGAAGAGGAAATTTTCGAGGAAGAACACTCTGATATTGAGGCCGAAGAGGAAGTAGAGGAAGAACAAGGCGAGGAAGtggaggaagaagaaggagaagaagaagaagatgatgatgatgaaggcGTACAAATACACGATCTGAATGGCACTGTACTAATGGTTGCCAAAGACGCCGACGGAAATCAGATTTTAATTCAGAAAAACGTTTCCGATATCGTAAACGACGACTCTATGGAAGCCGTTACCGGTTTTATCTACTCCGATGAAACCGATTTTGAAGAGCTCCGCGGTTTCGCAGTCGAACGAGAAGGAAGCGACGACGAAGCGATGGACGAGGAGAAAGACGCACAGGAAGACGATGCAATGGAAGAAGAAGTGTCTGAGGAAgaaaaagatgctgaagaggaaGATAACATGGAGGAAGGTGTCGAAGAGGAAAAAGACGACCAAGAAGACGAAGCGATGGAGCTAACTGCCTCAGCAAAGACTAAGGAAGACGAAGAAGCAGAATTGAGTGAACAcgaagaggaaaaagaagaagttaATGAAGAGGATGAGAATGAGGAAGCAGACGAGGAAAGTGATGTACAGGATTCTAATACGAGTGCCAAAAGCGATGTGTCAAGGACGTAG
- Protein Sequence
- METKERYDELCRLCASYDAVKMDIFGKEGKNRQLVDKIQTCLPFKIDEDDRLPKCLCYRCMYNLENFYDFRTACVNAVALLERCLPPGSNTADSEVQNDVNNYSELRTELLKEKEKMPILIPEAPIVNPNAALGTPPRLNSDGEADQEIEEILDASGTEDGFEDTEDRKSDEYEMDMETNPSDFLEMTPMVTEELDENETAKAPKVETRNSDVFQHTAEQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGAKVVTDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHRGHPAVTCAYCSRIYSTRTNLEEHIKSRHTGLPPPPELPIPYVQPDNRYKCKTCPKMYTTVTELNKHGRVCLGDRPKEKPNKKAPRKSKSLIDTTDPSSTDTDNDSKDYRNAEAKLSKNPQLTILKQALIKGEGSKRDYEDRNTSNHKLVEIPKTDGVEGDGQKRWYCESCPQNFSSVDKLKEHETTHDAERPYICILCEKDFVVKSSLSRHILSSHGVDPSPIVDSDKCLKKTVLAQSWSKQLIKTERTKSGRDGSVSSEDAESAPGNMIEIETVFVCEICTRDFNDRASLWLHIRATHKECAAFACGVCLKICSDNAQLLNHVNMYHGGSKLLISEQRRYSCTICGRQHDSRKKLMTHVSIHNVDPGYDPASFVQLNSNYYNENVNSNEANEALMDFDAEDGDKIDCYICYKSFPNEDHLIRHQRNAHKSEPVIPSGGDPSATSNGSGAPGVNGTKAQYHLFFVCELCGSSHPSKWERWLHVSSNHSEEPSIRCEREDCGKIFATKTLRNDHAQHHLIQGSSPNTCEVCGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPDVMKLSSHVKSNHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLDVEASANNGVNENVINESLPYEKTAVPETELTCELCADLTFYNWESLCNHRRSMHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHKDVTCSYCLKTSASKDHLAAHILKIHRYEPYVKLGIRESSNFKQTTVEGEGIHHCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHVENHHSTYTCHLCNETVTSKLGIMTHNRVNHMEHPDLTCDHSSCKKLFRTKEDLESHRKDHKYHNSPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVEDEHTGVLLKPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTTDSDIRYHYEHIHNVPKDQLAGFEKRLEMRPDEFENPDVVVKEEPEDYDYDDGVCDDDAFDYKRRRNDTYDCDICPEIFLNRDTLSDHYRNVHNKDPQKMFKKIKLDGSKSSKAKQKMRERENFECRNCSKQFCTKTLFWNHINVCTRRNSGSQEETQYPTSILEAHLKNNNKIKKEPLEPVLNESNLNIPDFNLFEDINMQLSEQKPVPNLMPLSQMRLLNNMKCSRKDSRKVYDESTNTECTCEVCGKPWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCRTYEELAEHLKATHESILSCEGNNFTCKTCGRYHNARSKLLLHMSIHINSTGIAWCPKCEQSFESEEKLNEHSATCDKRQPDYEEHSVELARNLKHEVDDKGSLIGDGTSLTGEGDFSDRHHSNSDNSEGDDTSNGETGTEDEEQEPEEETESRTNSRATCEVSYRSESEDERESDDEDIHVTGEIDIDEKVKIESSVEAKNVKKAGQVTANSGEGEQNEDKEIKPTDAVENIQKEKDRKNRVIEESDDDGPPILSPVMPLSAEHDTEERDDVVGHKLSPMVPFKVQEENEMKTVVKDAQRPQPVEVDAEDSPYDEGETSAGNGKEFAEELASEEEAEAELAEDDNDEIDDEDSRIHVVNPNDEYHSDDSQGDDESAGEEEEIFEEEHSDIEAEEEVEEEQGEEVEEEEGEEEEDDDDEGVQIHDLNGTVLMVAKDADGNQILIQKNVSDIVNDDSMEAVTGFIYSDETDFEELRGFAVEREGSDDEAMDEEKDAQEDDAMEEEVSEEEKDAEEEDNMEEGVEEEKDDQEDEAMELTASAKTKEDEEAELSEHEEEKEEVNEEDENEEADEESDVQDSNTSAKSDVSRT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00653028;
- 90% Identity
- iTF_00653028; iTF_00343341;
- 80% Identity
- -