Tlin012591.1
Basic Information
- Insect
- Tromatobia lineatoria
- Gene Symbol
- -
- Assembly
- GCA_949699805.1
- Location
- OX453040.1:1756467-1759359[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.1e-09 6.4e-06 26.6 0.0 3 37 17 51 15 54 0.90
Sequence Information
- Coding Sequence
- ATGGTTCGTCGATATGTGCGAAAGACAACCCGTGGTTGTTGGGACGAGCGTGCGATGGTATCAGCGATGGACGCGATCCAGTCCAAAAAAATGGGTTACTTACAATCGGCCAAGAAGCACGGAGTCCCAAGATCCACACTGCGtcgaataatgaagaaattagcAGCGGACGGTGAGGTGAACATCCGGTCACCTTTAGGTTCAAAGGCCTCGATATTCACAGCGAGCGAGGAGAAGCAACTGGCGGCGCATCTCTTGACCATCGAAAAAAGTCTCTTCATCATAACAAACGTAGCTCGTCGTAAGCTGGCCTACCAATTAGCCACAAAAATCGGCAAAGCCAACAAATGGAAGGACAACATTGCCGGCAGAGAATGGCTGAGAGATTTCATGCGAAGAAACGAAGAAGTTGCCGTAAAACCAAGTCCTCCAGGAAAACCAGCTGCGCCAAAAGTCGTAGGCTTCAATAAACCGGCAGTCACTAAATTCTACGAAGTCCTCGGTGATTTGTACAACAAACACCAATTAACCTCCGACAGAATCTACAATTGCGACGAAGTTTCCATCACCTGCGATGCTAAGTCGCAGGGAAAAACCATTTCCCTTAAGGGTCACACACCAGGAGCGCCAGGATCTGCGCCCGTTGAACCTGGAAAGACAATTACCGTTGAACTGTGCATGAGTGCAACTGGCGTTTTTATGCCTCTTCTCTTTGTATTTCCTCGATCTTCGCTGGATCCTCAATTCACGAGTCACTTAATACTGCCTTGTTACACACGATGCCACGAATCCGGTTGGATGATGAGCGATTCCTTCTTCTGTTGGCTCAATCATTTCGTTAAATTCTCGCGAGCGACTCCGAATAATCCAGTGCTCTTGCTGATGGACGGAGACACGAGTCACACGATGACAATACCGCTTCTCGAATTGGCGAGGGACAACGGAGTGATAATGCTCTGCTTGCCGCAAAATTGTACCCACAAATTGCAACCTCTTGAAGCTGAGTTTTTTGGACCTTTAAGTAAACACTATGCAACTGCAGTTGCCAACTGGATAGCTACGCATCCTGGACAACCTGTGACGATTTATCAAATTCCCATGCTCTTTGAGCAAGCCTTCATTCAATCGGCAACGATGGTTACGGCGTTGATCGCTTTTAGAAAAACTGGGATATGGCCTTTTAATCCTCATAATTTTACGGAACAAGATTTTGCAGGATCAGCATCGAATCTCTTGCCTCAACAAAATGCTCCGGCGATAGAACCTGCGCAAAATTCGGTCGTCAATAATAACAAGGAACCTGTACCGTTGGCACACACTTGGAAAGGAAATAATTGCGCCGAGGAAATGAGAGCAACTACATCCACGTCTTTTGTCGAAGCTGTCTTAGGAGAACCACAAAATCATGCATCGAGAAAGCGACCAAACCAATATGCCGTGCCAGTAATACAACAGAGTTGTTCTCAGAATAATTCAAAAGAACCTACAATTCCGAATCCTCCTTGGAAATCTATGGTCAATTGTGTGAATGATATGAGAGCATCGTCAGCTCTCGAAGCTGCGCTAGAGCATCAAAATAATCAGCAGAGGAAACGCACACAACACGCCATTGCATCGTCGTCTCTACCGGCAGCAGGGcatttaaattatcaaataaataacatGGAACCTGCAATGCCTGGACCTCATTGGAAGTCCGCAAATTCTGTGAATGAGATGAGACTGTCTACGTCTTCGGCTTATGTCGAGGCAGTATTTGGAGGACCACAAAATCATCCATCGAGAAATATGGAAGAACCCCAAGTTCCAGGGCCTTCTTCCGAACCTTCGATATATAATATGATTCCACACATGTTTATGTGA
- Protein Sequence
- MVRRYVRKTTRGCWDERAMVSAMDAIQSKKMGYLQSAKKHGVPRSTLRRIMKKLAADGEVNIRSPLGSKASIFTASEEKQLAAHLLTIEKSLFIITNVARRKLAYQLATKIGKANKWKDNIAGREWLRDFMRRNEEVAVKPSPPGKPAAPKVVGFNKPAVTKFYEVLGDLYNKHQLTSDRIYNCDEVSITCDAKSQGKTISLKGHTPGAPGSAPVEPGKTITVELCMSATGVFMPLLFVFPRSSLDPQFTSHLILPCYTRCHESGWMMSDSFFCWLNHFVKFSRATPNNPVLLLMDGDTSHTMTIPLLELARDNGVIMLCLPQNCTHKLQPLEAEFFGPLSKHYATAVANWIATHPGQPVTIYQIPMLFEQAFIQSATMVTALIAFRKTGIWPFNPHNFTEQDFAGSASNLLPQQNAPAIEPAQNSVVNNNKEPVPLAHTWKGNNCAEEMRATTSTSFVEAVLGEPQNHASRKRPNQYAVPVIQQSCSQNNSKEPTIPNPPWKSMVNCVNDMRASSALEAALEHQNNQQRKRTQHAIASSSLPAAGHLNYQINNMEPAMPGPHWKSANSVNEMRLSTSSAYVEAVFGGPQNHPSRNMEEPQVPGPSSEPSIYNMIPHMFM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01207276; iTF_00343101; iTF_00652618; iTF_00414225; iTF_00459673;
- 90% Identity
- iTF_00343101;
- 80% Identity
- -