Tlin008369.1
Basic Information
- Insect
- Tromatobia lineatoria
- Gene Symbol
- KBTBD4
- Assembly
- GCA_949699805.1
- Location
- OX453037.1:21551643-21554971[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.5e-05 0.016 15.7 0.0 2 38 203 239 202 245 0.84 2 4 5.5e-12 5.8e-09 36.3 0.0 5 44 256 295 253 296 0.86 3 4 0.03 32 5.1 0.0 7 34 310 336 306 342 0.83 4 4 3.2e-11 3.3e-08 33.9 0.0 4 39 367 402 364 407 0.93
Sequence Information
- Coding Sequence
- ATGTCTGCGATAGTAGCGAGCAACAGTCAACCGCAAGTTGACGAGAGCTACTGTTTCAAATGGAGCGATTATCAGAATCACTTGTCGGGAGTCGTTCGTCAGCTTTTGGAGGAAGAATGCATGGTCGACGTGACCCTCGTCGCTGCCGGAGAACGCATACAAGCTCATCGAATCGTACTCTCCTCCTGCAGCACTTTATTTCAAGAATTACTCTGCGATGTCAACGAGGATCATTCCACAATAATATTGAGTGATATTTCTCCTCAGGATGTCAGATGTATTGTAGATTTCAGCTACCATGGcgaagttcgaattcccgtcgaAAATATCAGCAATTTACTTGAAGCTGCACATTCACTTAAAATCTGTGGTCTTATGGAGATTGATGGACTAGATGAGAATGATGGGATCATAAGTACAAAAGACTCGAATGAGGATATTACGGAATCAATACCGGAATTGAATGAATCCGATGAGCGCGGTTCGGAGCCATTATTGGCCCAAAAGAATTCGGACAACAGCTCTGAAAAAACCGACAAGGATGATTACGTCCCCgggaaaaataaacgaaagcgCAGAAGAGATTTAACGAAACGGGAATACAACGACGATATGCTAGCAGCTGCAATAAACGATCTGAAGGCCGGTCAGACGCTCATAGAGGCAGCTACAAAAAATAACATACCGCGTTCTACACTCTACATGAGGGCGAAAGCACTCGGAATACATTTGAATGCCTCGAGAAATGAGTATCCTGCAGAATGCATGAAAGCGGCGATAGACGCGGTGATTGGAGGTTTGAGCTTACAACAAGcttcggaaaaattttatataccaaaAACTGTGCTCTGGCGACGAATACAGAAGGAAGGCTATCAAATAATGCGCTCTGAGCTGAAGAGGTCCTATGGTTCGGATAAAAGGGAAGCGGCAGTCAAGGCACTGCAAAGAGGAGAAAATCTTACAAAGGTTGCATTAGAATTTCAGATACCAAAAACGACGCTTTTTCGTGATAAAGCACGATTGGTAGACGAGGGCAAGTTGCCGGAGTCATTCTGGAAGAAGCGAAAGGCTGGTGATGAAGAAGTCAAACGATTGCGTCTCGAAGAGGCGGTAGCGGCTTGTAGAGATGGTAAAATGTCCCAAGCCGTTGCATCTTTGACCTACAGAATTCCAAAAACGACTATTTGGCGTCGGCTTCAGCAGGAAGGGAAGAATTCCGAGCGTGTTGCAGCTGCGAAGGCTGCAGAACGAGAGGAAGAGGACGTAAGCCACGTAAAGATCGAACAACAGAGTCCAGAATTCGAGCTTTGTCAGGTCCCATCGGAAATTCCTATAACGTACATAGACGAGACCAGCTTGCCGGAGAATTCTGTAATAATTTTAACCACCGAAGACGTCGACGGCCTCAATCTTGAGGCAGGTAGACAAATTATCGTTAATCAAgATCCTGAACAAGAGTACGTTCGATGTGCTTTGAGCATAGCAGAAAACGCAGAGAGTACCAGTTACCAACCGGCGACCAGCTAA
- Protein Sequence
- MSAIVASNSQPQVDESYCFKWSDYQNHLSGVVRQLLEEECMVDVTLVAAGERIQAHRIVLSSCSTLFQELLCDVNEDHSTIILSDISPQDVRCIVDFSYHGEVRIPVENISNLLEAAHSLKICGLMEIDGLDENDGIISTKDSNEDITESIPELNESDERGSEPLLAQKNSDNSSEKTDKDDYVPGKNKRKRRRDLTKREYNDDMLAAAINDLKAGQTLIEAATKNNIPRSTLYMRAKALGIHLNASRNEYPAECMKAAIDAVIGGLSLQQASEKFYIPKTVLWRRIQKEGYQIMRSELKRSYGSDKREAAVKALQRGENLTKVALEFQIPKTTLFRDKARLVDEGKLPESFWKKRKAGDEEVKRLRLEEAVAACRDGKMSQAVASLTYRIPKTTIWRRLQQEGKNSERVAAAKAAEREEEDVSHVKIEQQSPEFELCQVPSEIPITYIDETSLPENSVIILTTEDVDGLNLEAGRQIIVNQDPEQEYVRCALSIAENAESTSYQPATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00343092;
- 90% Identity
- iTF_01497598;
- 80% Identity
- iTF_01497598;