Trha006963.1
Basic Information
- Insect
- Troides rhadamantus
- Gene Symbol
- -
- Assembly
- GCA_018246435.1
- Location
- DWLU01000993.1:19291-22109[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0017 0.44 13.2 2.1 1 23 60 82 60 82 0.96 2 17 1.7 4.4e+02 3.8 1.5 2 23 153 175 152 175 0.89 3 17 0.00011 0.027 17.0 1.2 3 23 183 204 182 204 0.98 4 17 7.3 1.9e+03 1.8 0.6 2 23 209 230 208 230 0.83 5 17 0.46 1.2e+02 5.6 5.0 1 23 234 257 234 257 0.96 6 17 0.00035 0.09 15.4 2.0 2 23 264 286 263 286 0.95 7 17 0.0021 0.53 12.9 0.1 2 23 293 314 293 314 0.96 8 17 0.0034 0.87 12.3 3.8 2 19 321 338 320 340 0.96 9 17 0.04 10 8.9 0.1 2 23 435 457 434 457 0.90 10 17 0.21 55 6.6 1.0 2 23 480 502 479 502 0.94 11 17 0.016 4.1 10.1 0.0 1 23 508 531 508 531 0.94 12 17 0.0026 0.66 12.6 1.8 2 23 537 559 536 559 0.94 13 17 0.069 18 8.1 0.1 2 23 565 587 564 587 0.92 14 17 3.5e-06 0.00091 21.6 0.2 1 23 594 617 594 617 0.94 15 17 0.0012 0.32 13.6 0.3 3 23 625 645 624 645 0.96 16 17 4e-05 0.01 18.3 6.8 1 23 651 673 651 673 0.99 17 17 9e-06 0.0023 20.4 2.7 1 23 679 701 679 702 0.95
Sequence Information
- Coding Sequence
- ATGGAAGGCATGGTAAAGAAGAAACCGGATAGTGAATCTGACGATAGTTACGTAGCACCATCGATCCAGAGAAGGAGAGGCTACACTGCTGTAGAAAGGAGAAAGATTATGAGAAATAATGTAACTGAAATCCTATCGAATTCCACACTGATCCCGTTCAGGTGGCTGAGAAAGTTCTACAAGTGCTTCTTCTGCCAGGAAATCTTTAAGACACCCAAAGAATGGCGTACACATCAGGAATTTCATAACATCAAGGCAGAATTGAGCGAAGCCTTGAAGAACTATTGGGAATCTACTGTTAATGTTGATGTGACCGAAATGGGTTGTCGGCTATGCTCCGACGCGATAGCTGATCTGAACGAGTTGACTGATCATCTAGTTGAGAAGCACCGTATCAAATTCATCCAGGACATCGGTAATTGCTTGAGCGGTTTCAAATTCGATGACACTTTCGTCTATTGCGTGGTTTGCGAGAAGAAATTCGTTATATTCAGCCACGTGCTGGTGCACTCCCACAGGGAGCACAAAGGCAGTACTAAAGTGCTCTGCGACATTTGCGGACAGAACTACCGAAGCTTGAACTACCTCAGGCACCATATCAGATCAGAGCACAGCGGCGGTATCAAATGCACTCAATGTGGTCTGCTGCTCCGCTACACCAAGATCAGGACCCACATGCAAAACGCCCACGGGAGAAAGTATAAATGCACGCGTTGCCACGAGTTATTCGAAACGCAGTACAAACGCGCTCACCACAAAATGGTGGTGCACGGAGACAAAGAGATGATTAGCTGCAAATACTGCACGAGGAAGTTCGTATTCAATAGTACAATGACGAGGCACGTGAGAGAGACGCACCTGAGGGAGAGGAACGCGGAGTGCAGCGTCTGCGGTTGGAGGTCATTCGGCGAGTACGCTCTGCAGAGGCACATGCTGAAACACACCTCGATAAGAAACATAAAGTGTCCGTCATGCGACAAAACCTTCAAAACGAAAAAAACGATGAAACAACATTGCAAAGCTACGTTCAAGCCTTTGTTAGAATTAATAGACGACCGTCTAGCAGAGAAAAGAAGGAAGGACGAACTGGCGAAACTTCTGACTGTGATACTAGAATATTCAACAATTATGCCTTTCAGATGGTGCGGTAACAAATACATGTGCTTCTTCTGCTGCTGTGACTTCATAGACAGCTTGAAACTTAAGCAACATACTAGAGAAGAGCACAGAGGTGCCAAGGTAAGGAAACTCATCCGCAGCATCGTTGGACAAACTAGAATTAAGTTGGATATATCCGAAATATCGTGCACTAAATGTCCTAAAACCCTAGAAACTCTGGATGAGTTTTTAATTCACGTGACAGAAGGTCATCAGGTCAGACTGAACCAGGATATTAGCAGGGACTTGCTATGTTTCCGGCTGTCGGACGATGGGATGTCATGCACTGAATGCAGCATCAGGTTCCGCTTTTTCGGACCTCTCCTCGCCCACGTGCACAAGTACCACAACAGAGCCAGCGCTTTCCTCTGCGAGATTTGCGGTCAGGGCTTCGTGGCCAAGGCGAACGTAGACAGCCACGTGAGGAACGTACACTCGAACCCAAACTCACGCTGTGACAAGTGCGACAAGGTCTTCGCCTCCAACTACGCCCTCTCCTGCCACTACATGAAGGTGCACAGATCTGATAAGCTGAGATGTCCGAAATGCCCTGAAATACTAGCGAGCAGGTATCTGAAAAAGCGCCACTTGGCGCTGGTGCACGACGTGAAGAGCTCGCAGTTTGTCTGTGAGATTTGCCCCAAGGTATTCACGACAAAGAGCGCTCTCGTGCAGCACAACTCACGAGTGCATCTGAAGGAGAAGTCGGTCGCATGCGAAGTGTGCGGCTTCAGAGTGTTCAGCAAGGAGCTGCTGAAGCGGCACATGGTTAAGCACGACGACACTAGGCCATACCAATGTGAGTACTGCAAGAAGTGCTTCCAGAGGAAGAAGACTTTGGAGTATCACAGGAGAATACACACTAACGACAGACGCTACTGCTGTTCGGAGTGCGGCAAGGCGTTCGTGCAGGTTACCAGCCTAAAGTTACACCTCAGGGTGCACCACTCTATCATCAAGGAGGGTAGTCAGtga
- Protein Sequence
- MEGMVKKKPDSESDDSYVAPSIQRRRGYTAVERRKIMRNNVTEILSNSTLIPFRWLRKFYKCFFCQEIFKTPKEWRTHQEFHNIKAELSEALKNYWESTVNVDVTEMGCRLCSDAIADLNELTDHLVEKHRIKFIQDIGNCLSGFKFDDTFVYCVVCEKKFVIFSHVLVHSHREHKGSTKVLCDICGQNYRSLNYLRHHIRSEHSGGIKCTQCGLLLRYTKIRTHMQNAHGRKYKCTRCHELFETQYKRAHHKMVVHGDKEMISCKYCTRKFVFNSTMTRHVRETHLRERNAECSVCGWRSFGEYALQRHMLKHTSIRNIKCPSCDKTFKTKKTMKQHCKATFKPLLELIDDRLAEKRRKDELAKLLTVILEYSTIMPFRWCGNKYMCFFCCCDFIDSLKLKQHTREEHRGAKVRKLIRSIVGQTRIKLDISEISCTKCPKTLETLDEFLIHVTEGHQVRLNQDISRDLLCFRLSDDGMSCTECSIRFRFFGPLLAHVHKYHNRASAFLCEICGQGFVAKANVDSHVRNVHSNPNSRCDKCDKVFASNYALSCHYMKVHRSDKLRCPKCPEILASRYLKKRHLALVHDVKSSQFVCEICPKVFTTKSALVQHNSRVHLKEKSVACEVCGFRVFSKELLKRHMVKHDDTRPYQCEYCKKCFQRKKTLEYHRRIHTNDRRYCCSECGKAFVQVTSLKLHLRVHHSIIKEGSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01494502;
- 90% Identity
- iTF_01494502;
- 80% Identity
- -