Taea024764.1
Basic Information
- Insect
- Troides aeacus
- Gene Symbol
- -
- Assembly
- GCA_033220335.2
- Location
- CM067297.1:1453060-1455891[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0016 0.15 13.2 2.1 1 23 61 83 61 83 0.96 2 17 1.6 1.5e+02 3.8 1.5 2 23 154 176 153 176 0.89 3 17 9.8e-05 0.0094 17.0 1.2 3 23 184 205 183 205 0.98 4 17 6.7 6.4e+02 1.8 0.6 2 23 210 231 209 231 0.83 5 17 0.42 40 5.6 5.0 1 23 235 258 235 258 0.96 6 17 0.00099 0.095 13.8 1.3 2 23 265 287 264 287 0.95 7 17 0.0019 0.18 12.9 0.1 2 23 294 315 294 315 0.96 8 17 0.0031 0.3 12.3 3.8 2 19 322 339 321 341 0.96 9 17 0.037 3.5 8.9 0.1 2 23 436 458 435 458 0.90 10 17 0.2 19 6.6 1.0 2 23 481 503 480 503 0.94 11 17 0.015 1.4 10.1 0.0 1 23 509 532 509 532 0.94 12 17 0.0024 0.23 12.6 1.8 2 23 538 560 537 560 0.94 13 17 0.022 2.1 9.6 0.1 2 23 566 588 565 588 0.92 14 17 3.3e-06 0.00031 21.6 0.2 1 23 595 618 595 618 0.94 15 17 0.0011 0.11 13.6 0.3 3 23 626 646 625 646 0.96 16 17 3.7e-05 0.0035 18.3 6.8 1 23 652 674 652 674 0.99 17 17 8.3e-06 0.00079 20.4 2.7 1 23 680 702 680 703 0.95
Sequence Information
- Coding Sequence
- ATGGAAGGCATGGTAAAGAAGAAGAAACCGGACAGTGAATCTGACGATAGTTACGTAGCACCATCGATCCAGAGAAGGAGAGGCTACACTGCTGTAGAAAGGAGAAAGATTATGAGAAATAATGTAACAGAAATCCTATCGAATTCCACACTGATCCCGTTCAGGTGGCTGAGAAAGTTCTACAAGTGCTTCTTCTGCCAGGAAATCTTTAAGACACCCAAAGAATGGCGTACACATCAGGAATTTCATAACATCAAGGCAGAATTGAGCGAAGCCTTGAAGAACTATTGGGAATCTACTGTTAATGTTGATGTGACCGAAATGGGTTGTCGGCTATGCTCTGACGCGATAGCTGATCTGAACGAGTTGACTGATCATCTAGTTGAGAAGCACCGTATCAAATTCATCCAGGACATCGGTAATTGCTTGAGCGGTTTCAAATTCGATGACACTTTCGTCTACTGCGTGGTTTGCGAGAAGAAATTCGTTATATTCAGCCACGTGCTGGTGCACTCCCACAGGGAGCACAAAGGCAGTACTAAAGTGCTCTGCGACATTTGCGGACAGAACTACCGAAGCTTGAACTACCTCAGGCACCATATCAGATCAGAGCACAGCGGCGGTATCAAATGCACTCAATGTGGTCTGCTGCTCCGCTACACCAAGATCAGGACCCACATGCAAAACGCCCACGGGAGAAAGTATAAATGCACGCGTTGCCACGAGCTATTCGAAACGCAGTACAAACGCGCTCACCACAAAATGGTGGTGCACGGAGACAAAGAGATGATTAGCTGCAAATACTGCGCGAGGAAGTTCGTGTTCAATAGTACAATGACGAGGCACGTGAGAGAGACTCACCTGAGGGAGAGGAACGCGGAGTGCAGCGTCTGCGGTTGGAGGTCATTCGGCGAGTACGCCCTGCAGAGGCACATGCTGAAACACACCTCGATAAGAAACATAAAGTGTCCGTCATGCGACAAAACCTTCAAAACGAAAAAAACGATGAAACAACATTGCAAAGCTACGTTCAAGCCTTTGTTAGAATTAATAGACGACCGTCTAGCAGAGAAAAGAAGGAAGGACGAACTGGCGAAACTTCTGACTGTGATACTAGAATATTCAACAATTATGCCTTTCAGATGGTGCGGTAACAAATACATGTGCTTCTTCTGCTGCTGTGACTTCATAGACAGCTTGAAACTTAAGCAACATACTAGAGAAGAGCACAGAGGTGCCAAGGTAAGGAAACTCATCCGCAGCATCGTTGGACAAACTAGAATTAAGTTGGATATATCCGAAATATCGTGCACTAAATGTCCTAAAACCCTAGAAACTCTGGATGAGTTTTTAATTCACGTGACAGAAGGTCATCAGGTCAGACTGAACCAGGATATTAGCAGGGACTTGCTATGTTTCCGGCTGTCGGACGACGGGATGTCATGCACTGAATGCAGCATCAGGTTCCGCTTTTTCGGACCTCTCCTCGCCCACGTGCACAAGTACCACAACAGAGCCAGCGCTTTCCTCTGCGAGATTTGCGGCCAGGGCTTCGTGGCCAAGGCGAACGTAGACAGCCACGTGAGGAACGTACACTCGAACCCAAACTCACGCTGTGACAAGTGCGATAAGGTCTTCGCCTCCAACTACGCCCTCTCCTGCCACTACATGAAGGTGCACAGATCTGATAAGCTGAGATGTCCGAAATGCCCTGAAGTACTAGCGAGCAGGTATCTGAAAAAGCGCCACTTGGCGCTGGTGCACGACGTGAAGAGCTCGCAGTTCGTCTGTGAGATTTGCCCCAAGGTGTTCACGACAAAGAGCGCTCTCGTGCAGCACAACTCACGAGTGCATCTGAAGGAGAAGTCGGTCGCATGCGAGGTGTGCGGCTTCAGAGTGTTCAGCAAGGAGCTCCTGAAACGGCACATGGTTAAGCACGACGACACTAGGCCATACCAATGTGAGTACTGCAAGAAGTGCTTCCAGAGGAAGAAGACCTTGGAGTATCACAGGAGAATACACACTAACGACAGACGCTACTGCTGTTCGGAGTGCGGCAAGGCGTTCGTGCAGGTTACCAGCCTAAAGTTACACCTCAGGGTGCACCACTCTATCATCAAGGAGGGTAGTCAGTga
- Protein Sequence
- MEGMVKKKKPDSESDDSYVAPSIQRRRGYTAVERRKIMRNNVTEILSNSTLIPFRWLRKFYKCFFCQEIFKTPKEWRTHQEFHNIKAELSEALKNYWESTVNVDVTEMGCRLCSDAIADLNELTDHLVEKHRIKFIQDIGNCLSGFKFDDTFVYCVVCEKKFVIFSHVLVHSHREHKGSTKVLCDICGQNYRSLNYLRHHIRSEHSGGIKCTQCGLLLRYTKIRTHMQNAHGRKYKCTRCHELFETQYKRAHHKMVVHGDKEMISCKYCARKFVFNSTMTRHVRETHLRERNAECSVCGWRSFGEYALQRHMLKHTSIRNIKCPSCDKTFKTKKTMKQHCKATFKPLLELIDDRLAEKRRKDELAKLLTVILEYSTIMPFRWCGNKYMCFFCCCDFIDSLKLKQHTREEHRGAKVRKLIRSIVGQTRIKLDISEISCTKCPKTLETLDEFLIHVTEGHQVRLNQDISRDLLCFRLSDDGMSCTECSIRFRFFGPLLAHVHKYHNRASAFLCEICGQGFVAKANVDSHVRNVHSNPNSRCDKCDKVFASNYALSCHYMKVHRSDKLRCPKCPEVLASRYLKKRHLALVHDVKSSQFVCEICPKVFTTKSALVQHNSRVHLKEKSVACEVCGFRVFSKELLKRHMVKHDDTRPYQCEYCKKCFQRKKTLEYHRRIHTNDRRYCCSECGKAFVQVTSLKLHLRVHHSIIKEGSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01495213; iTF_01496751; iTF_01495959;
- 90% Identity
- iTF_01495213; iTF_01496751; iTF_01495959;
- 80% Identity
- -