Basic Information

Insect: Troides rhadamantus
Gene Symbol: Znf296
Assembly: GCA_018246435.1
Location: DWLU01009922.1:1-5929[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00025 0.063 15.8 0.4 3 20 10 27 8 27 0.97

2 11 0.00066 0.17 14.5 0.6 2 23 71 92 70 92 0.95

3 11 0.042 11 8.8 0.2 2 21 198 217 197 218 0.90

4 11 0.0017 0.43 13.2 3.0 1 23 226 249 226 249 0.94

5 11 5.9e-05 0.015 17.8 5.4 1 23 269 291 269 291 0.98

6 11 1.1e-07 2.9e-05 26.3 3.3 1 23 298 320 298 320 0.99

7 11 8.9e-08 2.3e-05 26.7 2.4 3 23 334 354 332 354 0.96

8 11 4.8e-05 0.012 18.1 3.6 1 23 360 382 360 382 0.99

9 11 6.3e-07 0.00016 24.0 0.5 1 23 388 410 388 410 0.98

10 11 3.5e-07 8.9e-05 24.8 1.3 1 23 416 438 416 438 0.99

11 11 0.00074 0.19 14.3 0.6 1 23 444 466 444 466 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00025	0.063	15.8	0.4	3	20	10	27	8	27	0.97
2	11	0.00066	0.17	14.5	0.6	2	23	71	92	70	92	0.95
3	11	0.042	11	8.8	0.2	2	21	198	217	197	218	0.90
4	11	0.0017	0.43	13.2	3.0	1	23	226	249	226	249	0.94
5	11	5.9e-05	0.015	17.8	5.4	1	23	269	291	269	291	0.98
6	11	1.1e-07	2.9e-05	26.3	3.3	1	23	298	320	298	320	0.99
7	11	8.9e-08	2.3e-05	26.7	2.4	3	23	334	354	332	354	0.96
8	11	4.8e-05	0.012	18.1	3.6	1	23	360	382	360	382	0.99
9	11	6.3e-07	0.00016	24.0	0.5	1	23	388	410	388	410	0.98
10	11	3.5e-07	8.9e-05	24.8	1.3	1	23	416	438	416	438	0.99
11	11	0.00074	0.19	14.3	0.6	1	23	444	466	444	466	0.98

Sequence Information

Coding Sequence: gaGTATGTACATAATAGCAGCACCTTCTGTCCACTTTGTGGTACATGCTATGTAGATTCTGATGGTCTTACCAAACACATGTGGGACAGTCATGCTGAGATAATGGGACCAAAGAAGAGGGGTAGGCCGAAGAAAATGGTAACCGatacaaTTCTGAATAAACTCTCCGAAAAtgggtattatttaaaaacaattccgGTGAAGAGATTGACATGTTCATTTTgcaaagagaaatttaaaaccATGGAGGAATTAGTTGTGCATATGACCGAACATAAAGAAACAAAAGTGTTATGCTGTgttatttgtaagaaaatgtATCTTAAGAAGAAATATTTCGATATACATCTGTGCATCGAGGACAAAATTCAAGGGAGCCATTTACAAGAGaaTGACCCACCCATTGTGCTGCCCAACAAGAGTGAAAGTGAAGATTTCATGATTGAAACATCTCTGAATCAATTGTTAGATCTTAGTAACAATCCAGAAGCGTGTACATCGTGGCAGGCCTGCAGTGCGTGCAGTGCACTGCTGGCATCACCGACCGCGCTCGACGACCACGTGGACGCGTTACATCCTGAACTTTCCCTACGCTGCGCCTTATGCAATAAGGTATTCGCTACGGTGAAGTCTGCGAGCCGCCACCGCAGTAAATGCGCGAGCGTGGAGCGCGCGCACGAGTGTGCCAGCTGCGGTCAGCGGTTCGCCCACGAGGTCTCGCTGAACAAGCACATACTGCACAGTCACGCTGGGCAAAGTGTCTCGGTCAAGTTCGTAGCGCGGGCGGTCACCGATGGTCAGAAGTACCAGTGTGAAACTTGCAACCGATGCTTCTTCAGGAAAGACCTGTTAGTGAAACACACGAAGAACCACAAGTCGAGCGACAAGTTTTATGAATGCGATATATGTAAGAAACGTTTTCATAGGAGCGACAACCTAAGATCACATATGCGGGTGCACGGTACGGCGGAAGGGGCCACCGCATCGGGGGCGTGCCTCTGCCTCTACTGCGGCCGTAGCTTCACTAACTCTTCGAATCTCATCGTCCACATGCGCAGGCACACTGGTGAGAAACCATACAAGTGCGACTTCTGTGACAAAgGGTTCCCAAGGTCATCAGATTTGCAGTGCCATAGAAGGTCCCACACTGGAGAGAAACCGTACATATGCGGCGTCTGTGGTAAAGGGTTTTCCCGCAGCAATAAGCTGTCAAGACATACGCGGGTGCACACTGGTTTGCGCCCGTATAAGTGTTCGTACTGCGAGAAGGCGTTCTCTCAAAGCAATGACCTGAATCTCCACGTCAGAAGACATACGGGCGATAAGCCCTACATTTGCGAGATATGCGGCGATCGCTTCATACAGGGCACTGCGTTACACAATCATAGACGTACGCACGGACATTACCCAACGACGGAGGCGCCGTCTGCTTCGCTGCCTGCTGCTCCTCTACCCTCAGTACTGTTCCCTCCGACGCTCGCGGTCGCGCCCCCGCCCGCTCAAATAATCGCACGCACTCACCGCTAG
Protein Sequence: EYVHNSSTFCPLCGTCYVDSDGLTKHMWDSHAEIMGPKKRGRPKKMVTDTILNKLSENGYYLKTIPVKRLTCSFCKEKFKTMEELVVHMTEHKETKVLCCVICKKMYLKKKYFDIHLCIEDKIQGSHLQENDPPIVLPNKSESEDFMIETSLNQLLDLSNNPEACTSWQACSACSALLASPTALDDHVDALHPELSLRCALCNKVFATVKSASRHRSKCASVERAHECASCGQRFAHEVSLNKHILHSHAGQSVSVKFVARAVTDGQKYQCETCNRCFFRKDLLVKHTKNHKSSDKFYECDICKKRFHRSDNLRSHMRVHGTAEGATASGACLCLYCGRSFTNSSNLIVHMRRHTGEKPYKCDFCDKGFPRSSDLQCHRRSHTGEKPYICGVCGKGFSRSNKLSRHTRVHTGLRPYKCSYCEKAFSQSNDLNLHVRRHTGDKPYICEICGDRFIQGTALHNHRRTHGHYPTTEAPSASLPAAPLPSVLFPPTLAVAPPPAQIIARTHR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01402868; iTF_00180670; iTF_00249870;
90% Identity: iTF_00180670;
80% Identity: -