Trha008508.1
Basic Information
- Insect
- Troides rhadamantus
- Gene Symbol
- -
- Assembly
- GCA_018246435.1
- Location
- DWLU01001487.1:12155-15853[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.19 50 6.7 0.3 1 22 262 283 262 283 0.95 2 22 3.8 9.7e+02 2.7 0.3 1 22 325 346 325 348 0.82 3 22 0.31 79 6.1 0.5 2 21 358 377 357 378 0.93 4 22 0.73 1.9e+02 4.9 0.1 2 23 386 408 385 408 0.89 5 22 0.0034 0.87 12.3 0.1 3 23 429 450 427 450 0.96 6 22 0.0037 0.94 12.1 2.5 1 23 456 479 456 479 0.95 7 22 0.071 18 8.1 0.0 1 23 505 528 505 528 0.90 8 22 0.0031 0.8 12.4 3.5 1 23 533 555 533 555 0.97 9 22 0.0088 2.2 11.0 0.3 1 23 561 584 561 584 0.95 10 22 0.0013 0.34 13.6 1.3 1 23 598 620 598 620 0.97 11 22 0.0001 0.026 17.1 1.8 1 23 669 692 669 692 0.97 12 22 0.0011 0.28 13.8 1.5 1 23 754 777 754 777 0.96 13 22 0.00062 0.16 14.6 2.1 2 23 801 823 800 823 0.95 14 22 0.0031 0.79 12.4 0.0 2 23 829 851 828 851 0.94 15 22 0.0056 1.4 11.6 0.2 1 21 894 914 894 915 0.95 16 22 0.00024 0.061 15.9 1.0 1 23 925 947 925 947 0.93 17 22 5e-05 0.013 18.0 0.3 2 23 1037 1059 1037 1059 0.93 18 22 3.7e-07 9.5e-05 24.7 1.0 3 23 1066 1086 1065 1086 0.98 19 22 0.0081 2.1 11.1 0.0 3 23 1107 1127 1105 1127 0.96 20 22 0.081 21 7.9 0.0 1 23 1150 1172 1150 1172 0.98 21 22 0.016 4 10.2 0.6 1 23 1178 1201 1178 1201 0.95 22 22 0.00051 0.13 14.9 0.4 1 23 1209 1232 1209 1232 0.96
Sequence Information
- Coding Sequence
- ATGAATTCGGGCCCTGAAAGTCCAGAAACCTTGATATCCGAGCCAGAGATAGCGTCGTTTCAAGTAGAAACTATTCTGTCTGAACCAGATGTTTACAATCACCAAGATGACGAAGATGTAGATTGCGAAACTCAAAATAATCAAGGTCAAAATTATGATACTGTAGACATGGAGTCTGATAATGAGATTGAAATTGCTCGACAACAAGAATGTGGTGTCGAAGTTGATCAACAAATAGATAACGAAGGGGAGGATGGGAATGGAATGGAAAATGTAGATAACGACGATGAAAATAACGGGGAAAGAAATCATAGCGACAATGATCAAATTGACGATAATGCTGATAGTCATGACGTGTTGCAAATTGTTAACGACGTTGAAGGTAGAGGGGATGATGAAACCAAAGAAGGCGAAGAAGGGAACGAGGatagagatgatgatgagcagCTAGAGTATAACCATGACGACGATTACGACGACTTACCTCCTATAGCTCCAGTCGTAGAAATTAATGAAGATATGCAAACAAATTCTTACAATAGTGAAGCaaacgaagaagaagatatggACGAAGCTGGCGACGCCAATGAAACCGCCGATGATGTTAAAGAACTTGACCCTGATAAATTGTATGTAACGAAAACACAAAGAGACTTTATACTCAAATATCGCGATATTATCGAGCAGATTAACACAAAAAGATGCCTTTGTTGCGACAGAGAGCATCCGCGGCGCAAAGCGGTGATACAACATTTACAGAAAAATGGACACAAGGTTCCGAAGCACACTTGTTACAATTGTGTTGTTACGTTCGGTCATATCGGCGCTTTACTCAGCCACATGCGGTCTAACACATGTACCGACTTGtggaaaattatatacaatgaaaacgGGATCACTGACGATTTAGTTTTGGAAGATGAACCGAAAGATACCAAAGTCCaatataaagacatttttaatgCTAGGTCGTACGCGTGCAAATTATGTCCTGCAAAATTCCAACTGAAACAGTTCATTATGAAACATGTTTTAGACGTGCATGAGGATGGCCAATCCCGCGTGCAACTCGTGTGCGTCCACTGTAACTCTAGATTCAAGGATAAGGCTATATGGAAGAAGCACATCCGTAATGGGGAATGTACAGTATACATCTCGTGTGACTTATGTTCAGAGAGATTTGGGAACATGCAAGATTTCAATGACCACGCATTGGCTGTACACGCAGGAAGTTTTGACCAATCtgataatcaaaataaatgCGTCGACGGGAGACCGACCGACTGTCCGATTTGCGGTAAGAAGAATAGTAGTTATCCAAACTTAGTGaaacatttgaaaattattcacAGTGAAGAAAAACCTCACTACTGCCAGCATTGTGAATCTAAGTTTGAACAAGCTGCTGACTTAAACAAGCATATCTATATGGAACATTCTGACCGAACATTGGGAATGCAAAGTTACGAGCCGGATATGTCGCTCGTTAAAGAAGAAGCCGAGGAATATCACTATTCTTGTACAGAATGTAATGCAATATTTGAGACCGTCGACGCTTGGACGGATCATCAGGTGGCTGAACATAATCAAATTGCACATCATTGTGATCAGTGCGATAAGAAATTTTTAAGACCATCTGAACTGGCGGAACACAAGAATACGCATTTACGAGTAAAGTTTTATCCCTGCAGTATTTGCACGAGCTCGTACAGTACACCTCAGAAACTTTCCGAACACGTTCAACAGAACCACCCGGGAGCCGCGGGAGCTTATGCACCTTTAGATTACGAATTTTTCTGCGACATCTGTATAAGATCATTCAAAAGTCGCCAGGCGTACTCGAATCATATGCGTATACACGCTAAGGTACCGACTACTAATAGAAAGCCCGGCGATCCGAAAGGATTTGCCCCACAAATTGTCGGAAAACCAATTAGGTCATTTTCTGTGGTACAACCTAGTTTTCTTTCGTTCAAACCCAATTGTAATGTTCCTAACGCTCCTTATTCGTGTGATATCTGCGGAAAAGGTTTCATGCACAAGAAGAATATCTGGAAGCATAAGAAAGTGCTCCATGCCGATCTTGTCGGCGACAGGAATGATAGTGAAGAAAACACCATGCAAGCATCTACTGAAGAGGATGAATATAATTTAGACGAAAATGGAGCCATTCTGTCGACTCCCCAgttcaatagttttaattttgctaATTTAACCAATAGTTTCCCGCAGCAGCAGACTACCCAGGATGCTACGCCTTTTTCTTGCGAGATATGTTTCAAACGATTTCCGCTTAGAACAAGCTTATGGAAACATAAACGTGCTAAGCACGGTATCATCAATGCGAGTGCCAGCGGCAGTGCTGACTCTCAAGGTATAATAGGAGAAGGTGGCAGATCGAGTTGTACTATTTGTAAAATTACGTTCTCAGATAAAAAATCATACTACCGTCATAGAAAGAATGTTCACAAGTCCTCGGCACAGATGTGCAAAATTTGCGGGAAACCTTTAAATTCTCCGGTAGAATTGTACGAGCATTTAAAAGCTGCTCATGCTAGAGAGCTACTGGGATATAACGCGAACCAAGGTCCTAGTAAACAGGAGATTGTTCAAGAATTAGAAGTTGAGTATGAAGCTGACCAGGATTCCGTAGATCCCGCCATGGAGTATCAAGCCCGTTATCCATGTGACACTTGCGGTAAGCAGTTTGTAGGGTTGCTTGCCTTGCAAAACCACCAATGTATAAATCAATTACAATCGTCCCCTCAAACTTTTGATTGCGAAATTTGTCACAAAAGCTATACCTCTATCTCTGCACTGAAGAGTCACCGGGGCTGGCATTTACGTTCCCCTGACGGTAAAGCGGCCGCCAATAACACCGGCCTTTGGATGCCGCAGCACAAAGTCACTAGCAAAGTCAGCAAACACGAAGTCGTTGACCCGTCGCAACTTGCAAGAGTTACTCATACAAACCCAGCGAGCATAGCCAAAAGAAGACTCCCACCCGAAGTGGAAGTGACCGTCGTGAATCCAAATAAGAAAATGCGCTCCGACGATTCGATAGAGTTGGAGCAACAGAATAATTCATCGACGGGGGCCGAAGACAGGTATTGTAACATATGCGACAAAGAATTCACCAAGCGAGCGGCGTATCAACGTCACATGGACGAAGTTCATCAACCGAATTCCGTGTTCTGTCCGGTATGCGACAAGAGCTTCACACGAAAATCCACGTTGATCGTTCACCTGAAGAAACATTACGAGAGCGGAGAGGGCAGCTCCTCCGTTGTGGATCAGATGGAGGACGATGGGCTTGCGTGCGACATTTGCGGAGCGCAATACGACAGCGAGAGCGCCCTCGCCGCGCACCGCGCGATGCACATCGGCGACGAATCCGGGGAGTCGGACGACGGCGACGACGGCGCCAGCGTGCCGCCCCCGGGCGAGTTCACGTGCGCGCAGTGCGGCGACGGCGTGGCCACGCCGCGGGACCTCATCGCCCACCGCTCCATGCACGCGACGCCGACCAAGTTCTTCTGCAACATCTGCAAGGTATACTTCGCGCGCGCCCTCGACCTCTCGTCGCACACGCGCGCCAGGCACGCGGACAATGAGAAGGTGTTCTTCCCGTGCGCGATGTGCGAACGGTTTTACATGAACAAGAAGAGCCTGCAGCGGCACATTGAGATGGCCCACTGA
- Protein Sequence
- MNSGPESPETLISEPEIASFQVETILSEPDVYNHQDDEDVDCETQNNQGQNYDTVDMESDNEIEIARQQECGVEVDQQIDNEGEDGNGMENVDNDDENNGERNHSDNDQIDDNADSHDVLQIVNDVEGRGDDETKEGEEGNEDRDDDEQLEYNHDDDYDDLPPIAPVVEINEDMQTNSYNSEANEEEDMDEAGDANETADDVKELDPDKLYVTKTQRDFILKYRDIIEQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNTCTDLWKIIYNENGITDDLVLEDEPKDTKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVQLVCVHCNSRFKDKAIWKKHIRNGECTVYISCDLCSERFGNMQDFNDHALAVHAGSFDQSDNQNKCVDGRPTDCPICGKKNSSYPNLVKHLKIIHSEEKPHYCQHCESKFEQAADLNKHIYMEHSDRTLGMQSYEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQIAHHCDQCDKKFLRPSELAEHKNTHLRVKFYPCSICTSSYSTPQKLSEHVQQNHPGAAGAYAPLDYEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGDPKGFAPQIVGKPIRSFSVVQPSFLSFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLVGDRNDSEENTMQASTEEDEYNLDENGAILSTPQFNSFNFANLTNSFPQQQTTQDATPFSCEICFKRFPLRTSLWKHKRAKHGIINASASGSADSQGIIGEGGRSSCTICKITFSDKKSYYRHRKNVHKSSAQMCKICGKPLNSPVELYEHLKAAHARELLGYNANQGPSKQEIVQELEVEYEADQDSVDPAMEYQARYPCDTCGKQFVGLLALQNHQCINQLQSSPQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNTGLWMPQHKVTSKVSKHEVVDPSQLARVTHTNPASIAKRRLPPEVEVTVVNPNKKMRSDDSIELEQQNNSSTGAEDRYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHLKKHYESGEGSSSVVDQMEDDGLACDICGAQYDSESALAAHRAMHIGDESGESDDGDDGASVPPPGEFTCAQCGDGVATPRDLIAHRSMHATPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCERFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01337894;
- 90% Identity
- -
- 80% Identity
- -