Smon003100.1
Basic Information
- Insect
- Sericinus montela
- Gene Symbol
- -
- Assembly
- GCA_029286605.1
- Location
- JAGSMR010000008.1:4239122-4243408[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0047 0.44 11.7 0.8 3 23 57 78 56 78 0.95 2 23 0.12 12 7.2 0.3 1 22 461 482 461 482 0.95 3 23 4 3.8e+02 2.4 0.3 1 22 524 545 524 547 0.82 4 23 0.0029 0.28 12.3 0.4 3 21 558 576 556 577 0.94 5 23 0.21 20 6.5 0.1 3 23 586 607 584 607 0.90 6 23 0.0036 0.34 12.0 0.1 3 23 628 649 626 649 0.96 7 23 0.0022 0.21 12.7 3.5 1 23 655 678 655 678 0.95 8 23 0.13 12 7.2 0.0 1 23 704 727 704 727 0.90 9 23 0.0033 0.31 12.2 3.5 1 23 732 754 732 754 0.97 10 23 0.082 7.8 7.8 0.2 1 23 760 783 760 783 0.95 11 23 0.0014 0.13 13.3 1.3 1 23 796 818 796 818 0.97 12 23 0.00011 0.01 16.8 1.8 1 23 867 890 867 890 0.97 13 23 0.0034 0.33 12.1 1.5 1 23 951 974 951 974 0.96 14 23 0.00073 0.069 14.2 2.3 2 23 997 1019 996 1019 0.95 15 23 0.052 4.9 8.4 0.1 2 23 1025 1047 1024 1047 0.93 16 23 0.0059 0.56 11.3 0.2 1 21 1091 1111 1091 1112 0.95 17 23 0.00024 0.022 15.8 0.9 1 23 1122 1144 1122 1144 0.93 18 23 4.7e-05 0.0045 18.0 0.4 2 23 1234 1256 1234 1256 0.93 19 23 1.1e-07 1e-05 26.3 1.1 3 23 1263 1283 1262 1283 0.98 20 23 0.0096 0.91 10.7 0.6 1 23 1302 1324 1302 1325 0.93 21 23 0.086 8.1 7.7 0.0 1 23 1346 1368 1346 1368 0.98 22 23 0.0017 0.16 13.1 0.3 1 23 1374 1397 1374 1397 0.96 23 23 0.00015 0.014 16.4 0.4 1 23 1405 1428 1405 1428 0.96
Sequence Information
- Coding Sequence
- ATGGAGAGTGAAAAGGATGAGgaggaagaagaagatgaagagATGAACGATTCCAGTCAACATTATACAAATGTCCCCAATATTCCTGAAGTATCCATCACTGTCATGCGTCCTAGTGGAGAGACATTACATGCTCGTCAGGGTATTCAACAACTTGCTTCTAAAGATTGTCTCGTATGCGGTAGATCTTATAGATATTCGCATAACGCCAGACGCCATGAGCTTATGGCACATAGTTTTGATCGATACACTAATAAAGTTAACACCAAAAATTCGCACACACATTTGCAACCAAAACTTAGACCCAACCCATTTAATCCCAAAGCAAGGCTTATGCCCAACCCAATCAGCCATAAGATGCAGCTTGTTTCGAAGGGGATGTCCGGAAAAAATATACAGCAAAAAGCTGTTGCTCCACCAAAGCCAATACCCATTAAAACACCAAAGGGCACACAAAATAATTTGCCATATCCACTTCGTATTAAAGCTCTAAAGGAtttgcaaataaaaaagaaggaaccacaaattttgaaaactttatTGACAACAAAACCTGAAGTTTTAGTATCTGAACCAGAAATTATAAACTCTGGACCCGAAAGCCCAGAAACATTGATATCAGAGCCTGAAATAGCCTCATTTCAAGTAGAAGCGATTCTTTCAGAACCTGATACTTATAATCAATTACAAGATGATGAAGTGGATGGTGATATGCAAAATAATCAGGGTCAAAATTATGATACTGTTGACATGGAATCTGATAATGAGATAGAAATTGCACGCCAACAAGAAGGTGAATGTGATCAGCAAGAAGATGACCAGCATATGGAAAATGGGGCCGATGATGGAAATGAAATGGAACATTTGGATAATGAAGATGAAAATAACATGGAAAGGAACCATAGTGGAAATGAACAAATGGACGAAAATGCTGACAGTCAagatgatttacaaattattcATGAAAATGAAGGAGGAGAAGAACAACACACCAAAGATGATGAAGAAGCAAATGAAGAGCAAGAGGAAGGGCATGCAGAGGTTaacaatgaagaaaatgaagatGACGATGACGAGCTGCCACCCATAGCTCCGGTGGTTGAAATCAATGAAGACTTACAAACAAATTCATATAACAGTGAGATGAACGAAGAAGAGGAGGTTGATGAAACAGCAGATCCAAATGATACCGCAAATGATCTCAAAGAACTTGATCCTGATAAATTATATGTTACAAAAACTCAAAAGGATTTTATCCTCAAATATCGCGATGTAATTGAACAGATCAATACTAAGAGATGCCTTTGTTGTGACAGAGAACACCCGCGACGTAAGGCTGTTATacaacatttacaaaagaaCGGACACAAAGTTCCAAAACATACATGTTACAATTGCGTTATTACTTTCGGCCATATTGGCGCTTTACTGAGCCACATGCGGTCCAATACCTGTACGGATTTatggaaaattatttacaatgaaaATGGCATAACCGATGATTTAGTTTTAGAAGATGAGCCCAAAGATACTAAAGTtcaatataaagatatatttaatgcAAGGTCATATGCATGCAAACTGTGTCCTGCAAAATTCCAgctaaaacaatttattatgaaACATGTATTGGACGTTCACGAGGACGGCCAATCGAGGGTGCATCTTGCTTGTGTCCACTGTGGCTCCCGGTTTAAAGATAAGGCAATGTGGAAGAAACACATTCGTAACGGGGAATGCACAGTGTACATTGCATGTGATTTATGCACAGAAAGGTTTATCAATATGCAAGATTTCAATAATCATGCTTTGGCCGTTCATGCTGGAAATTTTGATCAATCTGATAATCAGAACAAATGCGTTGATGGAAGGCCAACTGATTGTCCAATTTGTGGAAAGAAGAACAGTAGCTATCCTAATTTAGTAAAACATTTGAAAATCATACATAGTGAGGAAAAACCGCATTATTGCCAGCATTGTGATTCCAAGTTTGAACAAGCTACTGATCTCAATAAACACATTTACATGGAGCATTCCGATAGAACCTTGGGAATGCAGTCTCAGGAGCCCGATATGTCACTTGTTAAAGAAGAAGCTGAAGAATATCATTATTCATGCACGGAATGCAATAACATATTCGAAACCGTCGATGCTTGGACGGATCATCAGGTAGCTGAACATAATCAAGTTGCCCATCACTGCGATCAATGCGATAAGAAGTTTTTGAGGCCATCTGAACTTGCGGAACACAAAAATACTCACTTGAGAGTGAAATTTTATCCTTGTAGTTTATGTGCTAATTCTTACAGCACGCCCCAGAAACTTTCTGACCATGTCCAACAGTCCCATCCAGGAGCAGGGGCCTTTACGCCTACAGATTCTGAATTTTTCTGCGATATTTGTATTAGGTCTTTCAAAAGTCGTCAGGCCTATTCAAACCACATGCGTATACACGCTAAAGTGCCTACTACTAATAGGAAGCCAGGAGATCCTAAAGGATTTGCTCCACAAATTGTTGGAAAACCAATCAGATCTTTCTCAATGGTGCAACCTGGATTCGTATCGTTCAAACCTAATTGTAATGTTCCCAATGCGCCGTATTCATGTGATATATGTGGAAAAGGTTTTATGCACAAGAAAAATATCTGGAAGCATAAGAAAGTTTTGCATGCAGATCTTGTTGGTGACAGAAATGATAGTGAAGAAAACACAATGCAAGCATCCACTGAGGAGGATGAATACAATTTGGATGAAAATGGCGCTATACTATCTACTCCACAATttaacagttttaattttaccaACTTAACAAATAGCTTACAACAACAAACTTCTCAAGAATCAATGGTCTATTCTTGCGAACTGTGCTATAAACAGTTTCCACTTAAAACTAGTTTGTGGAAACATAAACGGGCAAAACATGGAATTATTAATGCCAGTGCTACTGGTTCCGATATGCAAATGGTGGGAAGTGAGACTGGTAGGTCCAGTTGCACGATTTGTAAAATCACATTTACAGATAAAAAGTCATACTACCGTCATAGAAAGAATGTTCACAAATCCTCAACTCAAATGTGTAAAATTTGCGGAAAGCCCCTTAACTCAACGTTGGAGTTATATGAACATCTAAAAGCTGCTCACGCTAGAGAATTATTGGGATATAACTCAAATCAAGGTCCTAGTAAGCAAACAGAAATTGTTCcagaaatagaaatagaatatgATGGTGATCAAGATTCAATGGATCCTACAGTTGAATATCAAGCCAGATATCCATGCGACACATGTGGAAAACAGTTTGTCGGTTTATTGGCATTGCAGAATCATCAATGTATAAATCAAGTGCAATCGTCGCCACAAACATTTGATTGCGAGATTTGTCATAAGAGTTATTCTTCTATTTCTGCTTTAAAAAGTCACCGCGGCTGGCATTTACGCTCTCCCGACGGTAAAGCAGCGGCTAACAACACAGGTCTCTGGATGCCTCATCACAAAGTGACTAGCAAAGTAAGTAAACATGAAATCGTTGATCCTTCACAACTAGCGAGGGTCACTCATTCGACACCAGTAAGTGTAGCCAAAAGGAGATTGCCACCGGAAGTAGAAGTGACTGTTGTTAACCCGAACAAGAAAATGCGTTCCGATGATTCCGTAGAATTGGAACAGCAGAACAATACATCAACTGGTGCGGAAGATAGATATTGTACTATATGTGATAAGGAGTTCACTAAACGTGCGGCCTTTCAACGTCATATGGACGAGGTACATCAGCCCAATTCCGTGTTCTGTCCTGTTTGTGACAAGAGCTTCACGCGGAAATCCACACTCATTGTTCACATGAAGAAACATTACGACACCGGTGAGGGCAGTTCCAACGCAGCTGATCAGATGGAGGATGATGTTCATGCGTGTGATATTTGTGGGGCGCAGTATGACAATGAGAACGCTCTCAGAGCCCACCGAGTGAGGCACCATGGCGATGATTCCGGTGGGGAGTCCGAAGACGACGGCACTAGTGTTCCTCCTCCTGGCGAATTCACTTGCGCACAATGCGGAGACGGTGTGGCAACGCCTCGAGACCTAATCGCACACCGCTCTATGCATTCCACTCCCACGAAATTCTATTGCAACATTTGTCAAGTTTTCTTTGCTAGAGCTATCGATCTCTCCTCCCATACGCGAGCAAGACACGCAGACAATGAAAAGGTGTTTTTCCCGTGTGCTATGTGTGACCGCTTTTACATGAACAAGAAGAGCTTACAGCGCCACATCGAGATGGCTCACTGA
- Protein Sequence
- MESEKDEEEEEDEEMNDSSQHYTNVPNIPEVSITVMRPSGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELMAHSFDRYTNKVNTKNSHTHLQPKLRPNPFNPKARLMPNPISHKMQLVSKGMSGKNIQQKAVAPPKPIPIKTPKGTQNNLPYPLRIKALKDLQIKKKEPQILKTLLTTKPEVLVSEPEIINSGPESPETLISEPEIASFQVEAILSEPDTYNQLQDDEVDGDMQNNQGQNYDTVDMESDNEIEIARQQEGECDQQEDDQHMENGADDGNEMEHLDNEDENNMERNHSGNEQMDENADSQDDLQIIHENEGGEEQHTKDDEEANEEQEEGHAEVNNEENEDDDDELPPIAPVVEINEDLQTNSYNSEMNEEEEVDETADPNDTANDLKELDPDKLYVTKTQKDFILKYRDVIEQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVITFGHIGALLSHMRSNTCTDLWKIIYNENGITDDLVLEDEPKDTKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVHLACVHCGSRFKDKAMWKKHIRNGECTVYIACDLCTERFINMQDFNNHALAVHAGNFDQSDNQNKCVDGRPTDCPICGKKNSSYPNLVKHLKIIHSEEKPHYCQHCDSKFEQATDLNKHIYMEHSDRTLGMQSQEPDMSLVKEEAEEYHYSCTECNNIFETVDAWTDHQVAEHNQVAHHCDQCDKKFLRPSELAEHKNTHLRVKFYPCSLCANSYSTPQKLSDHVQQSHPGAGAFTPTDSEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGDPKGFAPQIVGKPIRSFSMVQPGFVSFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLVGDRNDSEENTMQASTEEDEYNLDENGAILSTPQFNSFNFTNLTNSLQQQTSQESMVYSCELCYKQFPLKTSLWKHKRAKHGIINASATGSDMQMVGSETGRSSCTICKITFTDKKSYYRHRKNVHKSSTQMCKICGKPLNSTLELYEHLKAAHARELLGYNSNQGPSKQTEIVPEIEIEYDGDQDSMDPTVEYQARYPCDTCGKQFVGLLALQNHQCINQVQSSPQTFDCEICHKSYSSISALKSHRGWHLRSPDGKAAANNTGLWMPHHKVTSKVSKHEIVDPSQLARVTHSTPVSVAKRRLPPEVEVTVVNPNKKMRSDDSVELEQQNNTSTGAEDRYCTICDKEFTKRAAFQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYDTGEGSSNAADQMEDDVHACDICGAQYDNENALRAHRVRHHGDDSGGESEDDGTSVPPPGEFTCAQCGDGVATPRDLIAHRSMHSTPTKFYCNICQVFFARAIDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01496739;
- 90% Identity
- -
- 80% Identity
- -