Trha003157.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Troides rhadamantus
Gene Symbol
-
Assembly
GCA_018246435.1
Location
DWLU01000227.1:21491-31450[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 9e-05 0.023 17.2 0.1 3 23 130 150 129 150 0.97
2 18 8.1e-07 0.00021 23.6 1.2 1 23 156 178 156 178 0.99
3 18 5.1e-06 0.0013 21.2 2.7 1 23 184 206 184 206 0.99
4 18 2.9e-06 0.00075 21.9 2.2 1 23 221 243 221 243 0.98
5 18 4e-05 0.01 18.3 2.6 1 23 258 280 258 280 0.98
6 18 3.2e-07 8.3e-05 24.9 1.5 1 23 295 317 295 317 0.99
7 18 0.00014 0.037 16.6 2.8 1 23 323 345 323 345 0.98
8 18 3.9e-05 0.01 18.3 0.1 1 23 352 374 352 374 0.99
9 18 1e-05 0.0026 20.2 2.1 1 23 380 402 380 402 0.99
10 18 0.033 8.4 9.2 1.8 1 23 409 431 409 431 0.98
11 18 5.5e-07 0.00014 24.2 2.3 1 23 437 459 437 459 0.99
12 18 0.038 9.7 9.0 1.8 1 23 466 488 466 488 0.98
13 18 2.2e-06 0.00057 22.3 1.5 1 23 494 516 494 516 0.99
14 18 0.00042 0.11 15.1 0.7 1 23 523 545 523 545 0.99
15 18 2.5e-06 0.00063 22.1 1.9 1 23 551 573 551 573 0.98
16 18 0.0018 0.46 13.1 0.3 1 20 579 598 579 601 0.93
17 18 3.4e-05 0.0086 18.6 1.3 2 23 608 629 607 629 0.96
18 18 3.2e-06 0.00082 21.8 1.4 1 23 635 658 635 658 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAACAAATCAAAGCTGAACCAATGAGCTTCTACAGTTCTCACTCTCATGTGCACTCCGGCCCCCCAACAATAGTCCGTTCAGACTCTAATCATGGAGTGTTAAATATGAATCAGCATCATCACCAGGAAGATTCAAAAGATAGCCTTATAGTACAACAACAAGTACAACACCAAGAGCTGCTGGAACAGCATCAACAGCAACAAGAATTGCAAGCACAAGATGATGAGttaagtttCAAGGGGATGGATGACGAAGGAGTTGACATGGATATGGATGGACGGCAATGTGCTCagGGCATGGGAGTAGACATAAGTTCAATACAAGCTAAGTTAGAGATGTCTAATGGAGGGCAGGTACCAAGAAACAAACCACAAGCTTGTAAGGTTTGTGGTAAAGttttatcatcagcatcatcatatTATGTGCACATGAAGTTACATTCTGGAAATAAACCTTTTCAATGCACGGTCTGCGATGCAGCATTTTGTCGCAAACCGTATCTGGAAGTGCACATGCGAACGCACACAGGCGAAAGACCCTTTCAATGTGACCTCTGTCTCAAGCGATTTACACAGAAGTCCAGCCTGAACACGCACAAACGTGTCCACACCGATGAGCACATGCGCGCGTTGTTGGTGAAGGAGCGGCCCTACCAGTGCGATCTCTGTCAGATGCGCTTTACGCAGAGCTCCAGCCTCAACCGACACAAGAAAATACACACGGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATCCGCTTCACTCAGAAGTCCAGCCTGGGCCGACACGGAAAGATACATACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAGTGCGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACCGGCGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGTGCAAGGGCGTCCTTACACGTGCGGGCTATGCCCGGCGGCCTTCGCACGCCGCCCCTACCTGGACACTCACATGCGCACGCACACAGGCGAGCGGCCCTATCAGTGCGACGCCTGTCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAACGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGatacacacgcgcacgcacaccgGCGAGCGGCCGTATCAATGCGACATCTGCCTGAAACGCTTCACGCAGAAATCCAGTCTCAACATTCACAAGCGAACGCACTCAGTGCAGGGCCGCCCATTCCAGTGCCTCCAATGCCCCGCCGCATTCACCTGCAAGCAGTACCTTGAGATACATAACCGCACTCACACCGGCGAGCGGCCTTACCAGTGCGACGTGTGCCTCAAGAGATTCGCACAAAAATCTACACTTAATATACACAAACGAACGCACACAGTGCAAGGGCGGCCGTATCAGTGCATGGAGTGTCCGGCCGCGTTCACTTGCAAGCCGTACCTGGAGATTCACATGCGCACGCACACCGGCGAGCGCCCGTTCGAGTGCGATGTCTGTTACAAACGCTTCACACAGAAATCGACGCTCAACATTCACAAGCGAATACACACCGgtgaacgtccataCGCATGTGATATTTGCCAAAAACGATTTGCTGTAAAAAGTTACGTCACTGCCCATAgGTGGTCACACGTGGCCGACAAGCCGCTGAACTGCGAGCGGTGCTCGATGACGTTCACGTCCAAGTCGCAGTTCGCGCTGCACATCCGCACGCACTCCGCCGCCTCCTGCTACGAATGCAGCGTCTGCGGGCGAACCTTCGTGCGCGACAGTTATCTTATTCGACACCATAATCGTGTACACCGCGAGAACCACAGCAACATGTCGGCTAACAGTATCGGTACGATGACTGCCACCAACACAAACAACTCTAACAGCAATTACGACTCGCCCGGTGTTTGTGACTTAAGttttgTGCCGATGGTTAATCGCTACATGACTTCTCAGGGCACCCAAGTGTCTATGCAGGACACTAGCAAAATGTCCTCCATGTCTCCACAGTCCATCGCTTCGATTTCATCACCACCACCCCCACACACACCGACACCGCAGCCGCAGATGTCCGGTCAGATGCGTCTCACGGACTGA
Protein Sequence
MFEQQIKAEPMSFYSSHSHVHSGPPTIVRSDSNHGVLNMNQHHHQEDSKDSLIVQQQVQHQELLEQHQQQQELQAQDDELSFKGMDDEGVDMDMDGRQCAQGMGVDISSIQAKLEMSNGGQVPRNKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALLVKERPYQCDLCQMRFTQSSSLNRHKKIHTEEHRRALLEKVRPYQCHICFIRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPYTCGLCPAAFARRPYLDTHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCERCSMTFTSKSQFALHIRTHSAASCYECSVCGRTFVRDSYLIRHHNRVHRENHSNMSANSIGTMTATNTNNSNSNYDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTSKMSSMSPQSIASISSPPPPHTPTPQPQMSGQMRLTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00010401;
90% Identity
iTF_01115851;
80% Identity
iTF_01494474;