Trha028641.1
Basic Information
- Insect
- Troides rhadamantus
- Gene Symbol
- clz9
- Assembly
- GCA_018246435.1
- Location
- DWLU01028897.1:1-1356[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.2e-08 0.00045 22.0 0.0 8 40 13 46 7 50 0.90 2 2 2.5 1.4e+04 -2.0 0.1 35 44 110 119 108 120 0.87
Sequence Information
- Coding Sequence
- ATGGAATGTGATTTCAAAGAGAGCCGAGTTCAAATGGCATTAGATGCCCTCAAAAAGGGTCAATTTAAATCACAAAGAGCAGCTGCTTTGGCCTTTGATATCCCTGAAACTACTCTTCGCCGGCGGATCAGGGGTGTGGTATCAAGACCTCAAAAAACAGCCAATTGCCAGAAACTATCAGATACAGAAGAATCCACACTTTTAGCATGGATTCTGGATATGGACAAACGTGGTCTACCTCTTCATTTACCAATTGTTCGCCATCTAGCCCAGCTCCTAGTCTCTGCATGCCTACCATCAACCACTATTGGAGAAAACTGGGTTAACCGCTATGTTAAACGCCACCCTGAATTAAAGTCAAAATATACCCGGAAATATGATTATCAGCGTGCCAAATGTGAGGACTCTAGCCTTATTCAATCCTGGTTTATGCGTGTCCAGGAGACCATTCAAAAATATGGGATTTTAACAGAAGATATCTACAACATGGATGAGACTGGCTTTCAGATGGGTGTGGCATCAACTTCTAAAGTTATCTGTGGATCAGAGACTAAGCAGAGTCATGCAAAAGCTCTTCAGCCTGGGAATAGAGAATGGGTAACTGCAATTATTGCAGTAAATGCAACAGGATGGTCTCTTCCTCCTCAAATTATCTTTGCTGCTGCCAACCATCAATCCTTATGGTATTATGATATACCAGAGAATTATGTTCTTAGTGTCAGCAACAATGGCTGGACAACAGATGATTTGGGGATTAAATGGCTTCAAAAGGTTTTTGAGCCAAATACAGCTTTGCGGACTGCTGGAACATATAGACTATTAATTCTGGATGGGCATGGGAGTCATGCTACTGCAGAATTTGATAGATTCTGCATGGAGAAGAAGattattccattatatatgCCTCCTCATTCTTCTCATCTTCTTCAGCCATTGGATGTATCCTGCTTTTCACCTTTGAAGCATCTCTATGGTCAGAGAGTTCAGGAGTTGATCCAGAAGAGAATCTACTCAATTAAAAAAGAggattttctttatatctatccAGCAGTTCATCAGCAGGCTTTATCttcatcaaatattaaaagtgGCTTTACAGCTACTGGTCTGGTTCCTCTTTCTCCTGCAAGGGttctctcaaagattccaaAGACACCAACACCACCTTCTACCTCTCACAGCAATCAATCCTTTGGTATAGGAATAACACCAGCCAATATATATCAATTGGAACAGCAAAAGAAGAAGATTCAGTCTTTTAAGGATGCAGAAGTCTCTCCATCTAGAATAGAGGAGGCTATGAAGAAGGTGATGAAAAGTGCTGAAATAACCATGCAAAATACTCTTCTATTACAA
- Protein Sequence
- MECDFKESRVQMALDALKKGQFKSQRAAALAFDIPETTLRRRIRGVVSRPQKTANCQKLSDTEESTLLAWILDMDKRGLPLHLPIVRHLAQLLVSACLPSTTIGENWVNRYVKRHPELKSKYTRKYDYQRAKCEDSSLIQSWFMRVQETIQKYGILTEDIYNMDETGFQMGVASTSKVICGSETKQSHAKALQPGNREWVTAIIAVNATGWSLPPQIIFAAANHQSLWYYDIPENYVLSVSNNGWTTDDLGIKWLQKVFEPNTALRTAGTYRLLILDGHGSHATAEFDRFCMEKKIIPLYMPPHSSHLLQPLDVSCFSPLKHLYGQRVQELIQKRIYSIKKEDFLYIYPAVHQQALSSSNIKSGFTATGLVPLSPARVLSKIPKTPTPPSTSHSNQSFGIGITPANIYQLEQQKKKIQSFKDAEVSPSRIEEAMKKVMKSAEITMQNTLLLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00180403;
- 90% Identity
- iTF_00180403;
- 80% Identity
- -