Trha019180.1
Basic Information
- Insect
- Troides rhadamantus
- Gene Symbol
- -
- Assembly
- GCA_018246435.1
- Location
- DWLU01010429.1:1313-1915[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.5e-17 4.1e-13 50.9 0.0 1 42 83 125 83 128 0.94 2 2 4.5 2.5e+04 -2.8 0.0 30 41 128 140 127 141 0.71
Sequence Information
- Coding Sequence
- ATGATGGAGCACACATACCCCCGTTATTCGAACGCCTGCATCGGCGGTGGCGGGCTCCAACCGGACCACAGCATGTACATTAATAACGTCATAAACCCACACATGGAGTCAGATATGAACGATTATGGACAAGGGTTAGGAGTGACTGGACCATCGCCTGGCCCCAGCTGTGTTGCAGAACCACAAACTGCCCAAGAATCGGTACCGCAGACCCAAACTAAACGACGTCGGACAACAAACCCACAATCCGAAGAGAACTTTCAACGAGCCCTCGAAGCCGTCCGTTTCGGTGGCATCGGTTTCTGTAAAGCAGCACGGATGTTCGGAGTAAACAATAGGACATTGTGGCTCGAGTACAAAAAGAAGGGATACCCGAACAATAGACCGAGCATTAAGAGTCGGATAAAACGCGAGCACACCTCTCCGCCGCCTGAACCGAAGGAAGAAGCACCGCAACCCGAGCAACAGATGGCACTTATATGTCCTCCACATCCGGTACCAGTGGGTTTTATAGACTCCAGACCGATCGACTTCCCATTGCAAGGAGTACCACACAACTCGCCCTTGAATATTCTCGGAATGAACTTTAATTCGATGCAATAG
- Protein Sequence
- MMEHTYPRYSNACIGGGGLQPDHSMYINNVINPHMESDMNDYGQGLGVTGPSPGPSCVAEPQTAQESVPQTQTKRRRTTNPQSEENFQRALEAVRFGGIGFCKAARMFGVNNRTLWLEYKKKGYPNNRPSIKSRIKREHTSPPPEPKEEAPQPEQQMALICPPHPVPVGFIDSRPIDFPLQGVPHNSPLNILGMNFNSMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01495708;
- 90% Identity
- iTF_01495708;
- 80% Identity
- -